PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00066.1.g01410.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 502aa    MW: 52578.9 Da    PI: 7.945
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00066.1.g01410.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.5e-18419452134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  Zjn_sc00066.1.g01410.1.am.mk 419 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 452
                                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.57E-14411475No hitNo description
PROSITE profilePS5011411.147413449IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-15413463IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-14417450IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.97E-14418475No hitNo description
PfamPF003201.5E-15419452IPR000679Zinc finger, GATA-type
PROSITE patternPS003440419444IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MVRGPRTAIL MHHRVHLPVV DGARPAATQA IDRPMASGVF AEQMAREQSL LEATCGDLFD  60
HIDDLLDFSK EESAADVLLL DAPAPGSPIS ARIIDVGARR SDAPVTAAVV QPPTLVPPPT  120
GDAFFEDVAG AHGFKDGAGH IGSSKVVFAV SPRRNDGRGA GGWPARAYQQ AASVTRGAAV  180
RGDYLSVRGG WLGGGWGCRC SCEDLDMAQL EWLSGLFDDA SIPHEPAFPA RTTCAAPIKS  240
SALAANGHMP PPLPDKLDDA VFRSSSPTSV LEHNGFNAGS SNTNAAAGSA SSSSTNSSSS  300
SSSAWSAPVT SPRPDPPVLV IPARARSKRS RPSAFAGGRA VEPPTILVPT PMFSAASSLS  360
DPESIAESNP DPAPAKKKKA KKPAAPAPAA SDAEGDGDGD ADYVEGGERS QPQGTVRRCT  420
HCQIEKTPQW RAGPLGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPSIH SNSHKKVVEM  480
RQKAVRSGDP SCDLLQFIRR RD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542691e-154BT054269.1 Zea mays full-length cDNA clone ZM_BFb0206G24 mRNA, complete cds.
GenBankBT0557551e-154BT055755.1 Zea mays full-length cDNA clone ZM_BFb0170C21 mRNA, complete cds.
GenBankBT0670671e-154BT067067.1 Zea mays full-length cDNA clone ZM_BFb0175B18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954283.11e-149GATA transcription factor 8
RefseqXP_004954284.11e-149GATA transcription factor 8
TrEMBLK3YSS21e-148K3YSS2_SETIT; Uncharacterized protein
STRINGPavir.Ab03246.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.27e-37GATA family protein