PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00066.1.g00390.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 327aa    MW: 34484.9 Da    PI: 7.87
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00066.1.g00390.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00099138160123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C  C+k+F++   L  H  +H
  Zjn_sc00066.1.g00390.1.am.mk 138 YECRTCNKCFPTFQALGGHRASH 160
                                   99**********99999998887 PP
2zf-C2H211.80.00074227249123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cg  F +   L  H+r+H
  Zjn_sc00066.1.g00390.1.am.mk 227 HECSICGAEFASGQALGGHMRRH 249
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-10137162IPR007087Zinc finger, C2H2
SuperFamilySSF576672.11E-8137160No hitNo description
SMARTSM003550.16138160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014138165IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SuperFamilySSF576672.11E-8222249No hitNo description
PfamPF139121.4E-12226250IPR007087Zinc finger, C2H2
SMARTSM003550.016227249IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64227254IPR007087Zinc finger, C2H2
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MHTESESKLA LMAPTSSTDH SGELDRHQPL GVVKRKRTKR PRHQPPASSA SSSESTTTEE  60
EDMAHCLILL AQGGAGAVDS KPSPAPQPPH PPVVQQQAQP SPPTATPPPV VKSERYTSRK  120
YTEAATTADG VKAGFYVYEC RTCNKCFPTF QALGGHRASH KKPRLPAGDE EIASAINNKP  180
PAAMTTTASP PPPPPPRVDI AVFPDVTTAL SLNSHVNTGS SGKLRVHECS ICGAEFASGQ  240
ALGGHMRRHR PLNAPERTAA VTAISMDTKK EGSASINLEL DLNLPAPSDE DAVSLALPPV  300
VLGLGQFNDG KKAGLMLTAS ALVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039892e-63AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040262e-63AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149582e-63AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-63CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822199.11e-131zinc finger protein ZAT5-like
TrEMBLA0A2T7FE551e-130A0A2T7FE55_9POAL; Uncharacterized protein
STRINGPavir.Ab03370.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-44C2H2 family protein