PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00066.1.g00230.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 352aa MW: 37273.3 Da PI: 10.7302

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00066.1.g00230.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.1	3.6e-39	77	173	3	95
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssss 81 ++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++as++ +++s+sss Zjn_sc00066.1.g00230.1.am.mk 77 VRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIVAATGTGTTPASFSttSPSSRSSS 157 689************************************************************999998888888888888 PP TCP 82 asnsssg..kaaksaa 95 +++++++ +aa++++ Zjn_sc00066.1.g00230.1.am.mk 158 QQAPQIQlpSAAPAHH 173 8888887553333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.7E-33	82	161	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.838	82	136	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MPAQLTGRTG SNGSRAGGRS DPIRSGMLPA ARVSVSPPFP TRPHQVSQDR APMTTRPADG 60 GGGDKQLVPA SNNAHGVRKA PSKDRHSKVD GRGRRIRMPI ICAARVFQLT RELGHKSDGQ 120 TIEWLLRQAE PSIVAATGTG TTPASFSTTS PSSRSSSQQA PQIQLPSAAP AHHVLPHAAA 180 AAAPFILGKR VRGANDDTEV TAVGPAAGFW ALPARADFGQ LWSFAAAPDM MVAAVPEEAS 240 AARYLPVAQA QGNLNLLASF SGGPAGNGAT AARAEEESAH EFFCRSLIVL YVSLAFTHVN 300 QERDWMEPLL LAVLFPIPAS KKRLRKNPHS FTPFYCTHGA VNHVCNCTIR PP

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MPAQLTGRTG SNGSRAGGRS DPIRSGMLPA ARVSVSPPFP TRPHQVSQDR APMTTRPADG  60
GGGDKQLVPA SNNAHGVRKA PSKDRHSKVD GRGRRIRMPI ICAARVFQLT RELGHKSDGQ  120
TIEWLLRQAE PSIVAATGTG TTPASFSTTS PSSRSSSQQA PQIQLPSAAP AHHVLPHAAA  180
AAAPFILGKR VRGANDDTEV TAVGPAAGFW ALPARADFGQ LWSFAAAPDM MVAAVPEEAS  240
AARYLPVAQA QGNLNLLASF SGGPAGNGAT AARAEEESAH EFFCRSLIVL YVSLAFTHVN  300
QERDWMEPLL LAVLFPIPAS KKRLRKNPHS FTPFYCTHGA VNHVCNCTIR PP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	1e-100	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	1e-100	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	1e-100	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-100	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185649.1	2e-79	transcription factor TCP21-like
Refseq	XP_025814152.1	6e-80	transcription factor TCP7-like
Swissprot	Q9FMX2	8e-64	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0A9JXS1	2e-82	A0A0A9JXS1_ARUDO; Uncharacterized protein
STRING	OMERI02G35320.1	4e-76	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-46	TCP family protein