PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00065.1.g02330.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 239aa MW: 25414.7 Da PI: 9.3363 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 113 | 1.3e-35 | 73 | 126 | 5 | 58 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 +cprC s++tkfCyynny++sqPr+fC++CrryWt GG+lrnvP+Gg++rk+ Zjn_sc00065.1.g02330.1.am.mk 73 GEQCPRCASHDTKFCYYNNYNTSQPRHFCRSCRRYWTLGGSLRNVPIGGSTRKR 126 579*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 27.4 | 74 | 128 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.6E-31 | 74 | 126 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-23 | 75 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 76 | 112 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MMEAPLHQQA SSLSLGPQLQ ANYKSDHHLA IATSVAAKMA VSGCGSTAET AYLQQLHQTT 60 AVTEANGNNG ARGEQCPRCA SHDTKFCYYN NYNTSQPRHF CRSCRRYWTL GGSLRNVPIG 120 GSTRKRPPLA HPTSAPPASR RHVVFGGGGA AAPPTGLLGS LFALRAWPRA SNAEWRGRCL 180 RWGGLGGASE LLWPAGLLDN GIADEWKVPS VSEATWPEFF AAVAPPQAGG LLHGGAQLM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC107206 | 2e-74 | AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence. | |||
GenBank | AK119803 | 2e-74 | AK119803.1 Oryza sativa Japonica Group cDNA clone:002-176-F03, full insert sequence. | |||
GenBank | AP014959 | 2e-74 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 2e-74 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698063.1 | 1e-46 | dof zinc finger protein DOF1.6 | ||||
TrEMBL | A0A1E5UZ74 | 2e-50 | A0A1E5UZ74_9POAL; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-28 | DOF zinc finger protein 1 |