PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00065.1.g01580.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 555aa MW: 60259.8 Da PI: 8.8715 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.4e-18 | 195 | 241 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l + v+++G + W+ +ar+++ gR +kqc++rw ++l Zjn_sc00065.1.g01580.1.am.mk 195 KGPWTAEEDDVLREMVREHGDRKWAVVARYLP-GRIGKQCRERWTNHL 241 79******************************.************996 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.3e-17 | 249 | 289 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+e+d+ l++a+k +G++ W+ Iar ++ gR+++++k++w+ Zjn_sc00065.1.g01580.1.am.mk 249 LWTEEDDLALIEAHKVYGNR-WSMIARFLP-GRSENSVKNHWN 289 5*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.646 | 190 | 245 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-18 | 194 | 243 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.27E-30 | 194 | 288 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.8E-17 | 195 | 241 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 196 | 246 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-15 | 197 | 241 | No hit | No description |
PROSITE profile | PS51294 | 20.986 | 246 | 296 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 246 | 294 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 247 | 291 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-14 | 249 | 289 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-13 | 250 | 289 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MGSLHVMQAL TRCYYMDRHG VCEPERWVRH RRHVSSAGQR MGRLGKPRGG MDTGRRMRMV 60 ADDLDGRRCP CSLYIFRPPD RQCSISLASC DRSSPPRPAS FLPPCLDDRE PRMEAESSLR 120 FVQDVSAAAA VHPGNVARAV PAAAGMLRPS MGALLAGFGM APSGMFLPGR PPAPSPAQPR 180 AGSGHGERAP APAQKGPWTA EEDDVLREMV REHGDRKWAV VARYLPGRIG KQCRERWTNH 240 LRPDIKKSLW TEEDDLALIE AHKVYGNRWS MIARFLPGRS ENSVKNHWNA TRRSLKAKRR 300 LKKKRNAAQP TSPPGVDHCS VLEEYIRGVY PAAAADPAAP SPSVSPPSYN LAYGDAVSPP 360 PAATAGGLFD PAAAAAAGMG IMMYHNPGAS GISSSASPPS SNAGTAATDN VNNVPPPLML 420 DLNAYYGEAP LHAMRKPPPP AQMMMMMFNH HDQHQQQHQA SSAYYTNLLS YPSFFDSFTW 480 QPSSSVVHGS GSGDISNNNA NNAGGDHHQY YESEHAASGG GGSGRDDDAD VVQMASREFL 540 TPSPDEMNLN LARFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-43 | 195 | 291 | 7 | 103 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132209.1 | 4e-93 | uncharacterized protein LOC100193638 | ||||
TrEMBL | A0A317YFG4 | 6e-92 | A0A317YFG4_MAIZE; Transcription factor MYB98 | ||||
STRING | Sb01g013830.1 | 9e-91 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 2e-41 | myb domain protein 119 |