PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00065.1.g00350.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 330aa MW: 34752.6 Da PI: 8.8294

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00065.1.g00350.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	64.5	2.7e-20	25	71	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+Ca +Cv+apyfp ++p+kfanvh++FGasnv+kll+ Zjn_sc00065.1.g00350.1.am.mk 25 PCAACKLLRRRCAVGCVFAPYFPPAEPHKFANVHRIFGASNVSKLLQ 71 7********************************************98 PP
2	DUF260	55.2	2e-17	205	257	48	100
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++p ++r da+sslvyeA+ar+rdPvyG+v+ i++lqqq+e+l+a+lal+++e Zjn_sc00065.1.g00350.1.am.mk 205 EIPVQHRGDAVSSLVYEANARVRDPVYGCVAAISSLQQQVETLQAQLALAQAE 257 578999*******************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.357	24	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-19	25	71	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-15	204	255	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MKDEAAVGGG RAAGAGGGGA TAAAPCAACK LLRRRCAVGC VFAPYFPPAE PHKFANVHRI 60 FGASNVSKLL QVRAANSLLA GCFGYRLACS DRDRACGRAS GLAASSILSS SRILFWHSVL 120 AVPPGVSSLD HLAGAFCTTP TLPRSVFSSN LHADGAGTNS PYVAHRLFPA GYVRKKLQVH 180 HRAAAPASTD TPWCFSANLA CSTIEIPVQH RGDAVSSLVY EANARVRDPV YGCVAAISSL 240 QQQVETLQAQ LALAQAEMVR LNMNNAYMAH RLKKARSCGG GGSSTNTGSP SSMSSPKMEQ 300 PEAHCKATPE LLDMVVDQPY SMDDSQLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-21	22	260	8	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-21	22	260	8	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069911	1e-104	BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.
GenBank	KJ727650	1e-104	KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466719.1	1e-48	LOB domain-containing protein 4 isoform X1
TrEMBL	A0A3L6TSK8	2e-52	A0A3L6TSK8_PANMI; LOB domain-containing protein 4-like
STRING	Sb01g012810.1	5e-48	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP35252	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	6e-20	LBD family protein