PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00065.1.g00100.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 611aa MW: 66602.8 Da PI: 9.3625 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64.9 | 1.7e-20 | 257 | 334 | 2 | 79 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt qe+++Liea+r+++e+ g++ ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e+ +++ s + Zjn_sc00065.1.g00100.1.am.mk 257 WTLQETMLLIEAKRKVHEERHPGEQGLARWRWVEDYCWRAGCQRSQNQCNDRWDNLMRDYKKVRAYERAAGDGAPSYW 334 *****************************************************************9998766665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.269 | 249 | 313 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-6 | 250 | 315 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.97E-7 | 252 | 315 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.7E-14 | 255 | 336 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 611 aa Download sequence Send to blast |
LIVPKLISAT LKNDGHSQET SYRLRPLEQG PLQQVPPGAS RELLLHLLQA AFRVPEPLRN 60 AHGQNENQST HANLQRKKVR LSCGAHTGEL PLVAMARGSG GCCRLGGWVY GAATAEQVAV 120 GDRPVGRGGA RSDRWKPPPL PGKASAPLEA TTLAPTMGPR MPVKLFLSPT PAWLVGLRRL 180 AGGLSVWVAF FPQQPPCDAS DVSQDQQQAS SLHSKSEAME PMGGGGGSDV LHGQKGGEEA 240 SRNGAPTASR DYRRGNWTLQ ETMLLIEAKR KVHEERHPGE QGLARWRWVE DYCWRAGCQR 300 SQNQCNDRWD NLMRDYKKVR AYERAAGDGA PSYWAMGRAE RKGSGLPSNL LHEIYDGMTE 360 VVERKMSRTG SSGVAGGAFL AASSSGLSNV PMQASQLAQV VPRPLPHQPL GHGVPHYRSF 420 ESPERKRRRP SLESLDERPP ESITPASGPH FHHQAEHERR GREDDRSDES SDEEEEVLGG 480 AIGRCAAILS EALDSREAAE ERRHRELMAA EERRGRAVQV RREAGEQSVA ELAAAVNQLA 540 GSMLALADAK HKGPAAPKGW AGRLPNDDAA MRAASAHAAD HRVSVDQIEI TLRRYACSSH 600 LVARGRQRRV G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 424 | 428 | RKRRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962106 | 7e-98 | EU962106.1 Zea mays clone 240234 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792444.1 | 1e-130 | uncharacterized protein LOC112873645 | ||||
TrEMBL | A0A2T7C2T1 | 1e-131 | A0A2T7C2T1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J22454.1.p | 1e-128 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3294 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31310.1 | 5e-40 | Trihelix family protein |