PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00063.1.g02860.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LSD

Protein Properties

Length: 118aa MW: 12863.8 Da PI: 8.9958

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00063.1.g02860.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	30.5	6e-10	16	39	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC t+L Y rGA+++RC++C t Zjn_sc00063.1.g02860.1.sm.mkhc 16 CNGCPTILVYNRGATNIRCPNCRT 39 **********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.5E-9	14	41	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.7E-9	16	39	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.7E-4	52	80	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.4E-6	55	77	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MFHSLQQQEE MSELVCNGCP TILVYNRGAT NIRCPNCRTL NSAKSGASQI GQLQCGRCPT 60 TLAYQLGAST VECPRCRRVN PVRDARAPQT VLVENPKTLD EKGKLVSSVA VGVASWKR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001307436.1	1e-49	uncharacterized protein LOC107275235
Refseq	XP_021320000.1	9e-50	protein LOL4 isoform X3
Refseq	XP_021320001.1	9e-50	protein LOL4 isoform X3
Swissprot	Q84UR0	2e-47	LOL4_ORYSJ; Protein LOL4
TrEMBL	A0A1D6LEY8	2e-48	A0A1D6LEY8_MAIZE; Protein LSD1
TrEMBL	A0A3L6E707	2e-48	A0A3L6E707_MAIZE; Protein LOL4
STRING	GRMZM2G060057_P01	4e-49	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12333	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	3e-25	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]