PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00063.1.g02860.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LSD
Protein Properties Length: 118aa    MW: 12863.8 Da    PI: 8.9958
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00063.1.g02860.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD130.56e-101639124
                         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                                    C+gC t+L Y rGA+++RC++C t
  Zjn_sc00063.1.g02860.1.sm.mkhc 16 CNGCPTILVYNRGATNIRCPNCRT 39
                                    **********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.5E-91441IPR005735Zinc finger, LSD1-type
PfamPF069432.7E-91639IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.7E-45280IPR005735Zinc finger, LSD1-type
PfamPF069433.4E-65577IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MFHSLQQQEE MSELVCNGCP TILVYNRGAT NIRCPNCRTL NSAKSGASQI GQLQCGRCPT  60
TLAYQLGAST VECPRCRRVN PVRDARAPQT VLVENPKTLD EKGKLVSSVA VGVASWKR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307436.11e-49uncharacterized protein LOC107275235
RefseqXP_021320000.19e-50protein LOL4 isoform X3
RefseqXP_021320001.19e-50protein LOL4 isoform X3
SwissprotQ84UR02e-47LOL4_ORYSJ; Protein LOL4
TrEMBLA0A1D6LEY82e-48A0A1D6LEY8_MAIZE; Protein LSD1
TrEMBLA0A3L6E7072e-48A0A3L6E707_MAIZE; Protein LOL4
STRINGGRMZM2G060057_P014e-49(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.73e-25LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]