PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00063.1.g01650.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 313aa MW: 33152.3 Da PI: 8.07 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 252 | 294 | 3 | 43 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 W+t +d l++a k+++++ +W+++a+ ++ g+t c r Zjn_sc00063.1.g01650.1.sm.mk 252 DWSTGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 294 6********************************.*******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.831 | 160 | 201 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.055 | 164 | 216 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-4 | 165 | 202 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.45E-7 | 166 | 206 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.17E-4 | 168 | 209 | No hit | No description |
PROSITE profile | PS50090 | 6.702 | 245 | 299 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.56E-9 | 249 | 299 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-6 | 249 | 301 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-6 | 252 | 294 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-5 | 252 | 298 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-6 | 253 | 299 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MEFIDEWDYQ PRARVVHSGP NSTPSSSTAT GKSSPTLPHA AACAAAGGLL IAAAYYLPAA 60 YQVFSSILIW IAASLLLAPF APSSATGGDI SVGRGRLIPA PEPAQEPISD PVPAPRRGRR 120 QNPTAPQPKL SDPITAPVQP AASLQPLREA AAVADGCEKE EEGDDGEWTD QELELLRRQM 180 VKHPAGEPQR WEKIAAAFGG RRRPESVIHA AKSGTAVSAG GSFEQFLRKR KPLDPRAEAV 240 DAGGNTGGAD SDWSTGDDRA LLNALKEFPK DTAMRWEKVA AAVPGKTKAA CMKRVTELKR 300 DFRSSKGASE AAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 231 | LRKRKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972787.1 | 1e-140 | dnaJ homolog subfamily C member 2 | ||||
TrEMBL | K3YIP4 | 1e-138 | K3YIP4_SETIT; Uncharacterized protein | ||||
STRING | Si014113m | 1e-139 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10311 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45420.1 | 4e-55 | MYB_related family protein |