PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00062.1.g00380.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 383aa    MW: 41552.1 Da    PI: 7.4279
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00062.1.g00380.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS199.61.8e-61633832310
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaal 81 
                                   +++++ c+ a++ g+   a+a+L+ +s  a p gd ++R+a+ f+eALa+r +r  ++l+ a++ +  +  +  +   aa+
  Zjn_sc00062.1.g00380.1.sm.mk  63 KHVIMYCVAALDMGNVVTASATLQSVSSVACPLGDHLKRVAFTFAEALARRAMRLLPGLAWAMQLQVPPLPTtPAAINAAR 143
                                   7899********************************************************999766655444166666778 PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162
                                   + f  ++P+++++  + N+aIl a++ e++vHi+D++  ++ Q+  L++ +a+R++gppslR+T+v++    + + l++++
  Zjn_sc00062.1.g00380.1.sm.mk 144 RSFAALCPLVRVAATAVNHAILGAMAAERAVHIVDLGGANPNQF-ELIRLFAARSRGPPSLRLTVVNE----EDDFLSSVA 219
                                   88*****************************************8.7**********************....99******* PP

                          GRAS 163 erLakfAeelgvpfefnvl..vakrledleleeLrvkp.gEalaVnlvlqlhrll...........desvsleserdevLk 229
                                     L++ A +lgv+f fn++  + ++++  ++ +Lrv + +Eal++ + lqlhrl            +e+  ++ + d++L+
  Zjn_sc00062.1.g00380.1.sm.mk 220 GLLTEEAVRLGVNFMFNPVrsHIDHFTPADVAALRVVQgREALVIASTLQLHRLItdevtinlpvvAENNMIT-KADALLR 299
                                   ******************8666667777799999999999***************777777777754444444.59***** PP

                          GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerre 307
                                   ++++ +Pk+vv++eqea hn+e +  r+ +a+++y+alf  le +   l++   +r+ vEr+ll++e++++va  g  rre
  Zjn_sc00062.1.g00380.1.sm.mk 300 VLRDQKPKLVVLTEQEAHHNDEALKCRVENAFDHYAALFHDLEIGadgLASGVADRVAVERVLLRNEVMDIVAGYGVLRRE 380
                                   ***************************************99976623366777**************************** PP

                          GRAS 308 rhe 310
                                   rhe
  Zjn_sc00062.1.g00380.1.sm.mk 381 RHE 383
                                   **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.50436383IPR005202Transcription factor GRAS
PfamPF035146.4E-5963383IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MNPEGSNNNK GKAVVWWSRR EPSSLPMLVD AASPAVPPPL PAVPMANIPG PHKYGENRSL  60
FIKHVIMYCV AALDMGNVVT ASATLQSVSS VACPLGDHLK RVAFTFAEAL ARRAMRLLPG  120
LAWAMQLQVP PLPTTPAAIN AARRSFAALC PLVRVAATAV NHAILGAMAA ERAVHIVDLG  180
GANPNQFELI RLFAARSRGP PSLRLTVVNE EDDFLSSVAG LLTEEAVRLG VNFMFNPVRS  240
HIDHFTPADV AALRVVQGRE ALVIASTLQL HRLITDEVTI NLPVVAENNM ITKADALLRV  300
LRDQKPKLVV LTEQEAHHND EALKCRVENA FDHYAALFHD LEIGADGLAS GVADRVAVER  360
VLLRNEVMDI VAGYGVLRRE RHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-196937225304Protein SCARECROW
5b3h_D2e-196937225304Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303827.11e-101scarecrow-like protein 3
TrEMBLK3ZDF11e-110K3ZDF1_SETIT; Uncharacterized protein
STRINGSi024587m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-39scarecrow-like 3