PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00062.1.g00170.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 386aa MW: 41334.4 Da PI: 9.9827

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00062.1.g00170.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.9	5.4e-06	288	317	18	47
HHHHSSS--HHHHHHHHHHCTS-HHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvW 47 F+ + +p+ e+r LA+k+g++ +qVk W Zjn_sc00062.1.g00170.1.am.mk 288 SFKWCAHPDDEARMALAMKIGMEPTQVKHW 317 689999************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.65E-5	269	317	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.1E-5	287	317	IPR009057	Homeodomain-like
CDD	cd00086	7.82E-4	288	317	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MEEAGGDDMI NPDPQRLLTN GTKGSTTAPR CSNEADGRPA IGLPAPAWLP CDPRPIDRNG 60 DVFVGHMARV DVQMACAQGS MSIVFLREDN HVLCALSTVV SDRLPSHDRH SAHARIHLEK 120 KALLVVTLIS RKGKGPPLSS PQELYATRAL FLPSAHQALP LVAGRRIPHH YPPPRTSSLP 180 PLGAPSLAPA LHPQPPPTPR WPLPPSPSHP LVATALPSLA APLVGPTLHP LAGPPSPSPV 240 SRPHPASPGR SPRPSLSSSP SRPLTGPRPP STSCPPHHRP RPPPHRHSFK WCAHPDDEAR 300 MALAMKIGME PTQVKHWSMM TQPVTPSSTF THRSRLQSPE LNTVAQTDAG LPKVNMTTGD 360 DAMVGLDDPT VMTFKPLNAC SQLQSS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MEEAGGDDMI NPDPQRLLTN GTKGSTTAPR CSNEADGRPA IGLPAPAWLP CDPRPIDRNG  60
DVFVGHMARV DVQMACAQGS MSIVFLREDN HVLCALSTVV SDRLPSHDRH SAHARIHLEK  120
KALLVVTLIS RKGKGPPLSS PQELYATRAL FLPSAHQALP LVAGRRIPHH YPPPRTSSLP  180
PLGAPSLAPA LHPQPPPTPR WPLPPSPSHP LVATALPSLA APLVGPTLHP LAGPPSPSPV  240
SRPHPASPGR SPRPSLSSSP SRPLTGPRPP STSCPPHHRP RPPPHRHSFK WCAHPDDEAR  300
MALAMKIGME PTQVKHWSMM TQPVTPSSTF THRSRLQSPE LNTVAQTDAG LPKVNMTTGD  360
DAMVGLDDPT VMTFKPLNAC SQLQSS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP65935	2	2