PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00061.1.g01420.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 594aa MW: 63620.6 Da PI: 9.5607

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00061.1.g01420.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.6e-09	422	469	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + sk Ka +L + ++Y++sLq Zjn_sc00061.1.g01420.1.am.mk 422 SHSLAERVRREKISERMKLLQDIVPGC----SKVTGKAVMLDEIINYVQSLQ 469 8***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-16	416	486	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.86E-11	416	473	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-16	418	486	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.523	418	468	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	422	469	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-10	424	474	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MDLKQTAVIL SYAATHCLST AIGWAVTDIE MARGFIGSSV HATIWSLLPR APNATTIMWL 60 SEAPNADRFS VAFGWVSRAQ SFEWTVQEAD ASWVVSAIKI RTYRTWGVER PSKARPLIPH 120 LDAHFPPPPS SRRQARTHAL ARAHTYPARS SRTRPGHQPP ASRPRLWQRS AMAHDGFPGA 180 FNELPWPLTQ AAAAAGAPVD ALQAQLPYPL AGAEWEHDAA MSSLVPSPAS TVGGAGVHEA 240 VLMEHLASRL GVSMPSPPLP SPSSRYASCY STPVGSPSKP MNAAANVGFA ERAARLPCFA 300 ASNGKLSRVA SSQSLLAEQT SSPRGVAPAH GSSSDGPNRK RKAAAGGKSK AKDTMTTATA 360 KSPEAERRTK KSKLSADVGD DDEPRPAAGE AGHGNDKGKE LVAEPPKDYI HVRARRGQAT 420 DSHSLAERVR REKISERMKL LQDIVPGCSK VTGKAVMLDE IINYVQSLQR QVEFLSMKLS 480 TVNPRLEFDV DSFVQKDANQ SCVPAPTSLP QPPPPVYSTE GSNTAFCYTS SPAPAVPSPV 540 TANAKSFEPS SLVSHGSIQD HSLEGFENSN PHQIASPWVD DLQSLVQMGF RGNT

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MDLKQTAVIL SYAATHCLST AIGWAVTDIE MARGFIGSSV HATIWSLLPR APNATTIMWL  60
SEAPNADRFS VAFGWVSRAQ SFEWTVQEAD ASWVVSAIKI RTYRTWGVER PSKARPLIPH  120
LDAHFPPPPS SRRQARTHAL ARAHTYPARS SRTRPGHQPP ASRPRLWQRS AMAHDGFPGA  180
FNELPWPLTQ AAAAAGAPVD ALQAQLPYPL AGAEWEHDAA MSSLVPSPAS TVGGAGVHEA  240
VLMEHLASRL GVSMPSPPLP SPSSRYASCY STPVGSPSKP MNAAANVGFA ERAARLPCFA  300
ASNGKLSRVA SSQSLLAEQT SSPRGVAPAH GSSSDGPNRK RKAAAGGKSK AKDTMTTATA  360
KSPEAERRTK KSKLSADVGD DDEPRPAAGE AGHGNDKGKE LVAEPPKDYI HVRARRGQAT  420
DSHSLAERVR REKISERMKL LQDIVPGCSK VTGKAVMLDE IINYVQSLQR QVEFLSMKLS  480
TVNPRLEFDV DSFVQKDANQ SCVPAPTSLP QPPPPVYSTE GSNTAFCYTS SPAPAVPSPV  540
TANAKSFEPS SLVSHGSIQD HSLEGFENSN PHQIASPWVD DLQSLVQMGF RGNT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798622.1	1e-155	transcription factor BHLH089-like
TrEMBL	A0A3L6Q2U4	1e-165	A0A3L6Q2U4_PANMI; Transcription factor bHLH62-like
STRING	Pavir.Ha00788.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13313	25	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-60	bHLH family protein