PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00060.1.g02430.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRF

Protein Properties

Length: 163aa MW: 17985.4 Da PI: 7.9495

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00060.1.g02430.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.3	5.5e-23	81	125	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r + ++e Zjn_sc00060.1.g02430.1.sm.mkhc 81 EPEPGRCRRTDGKKWRCWRSTIQNEKYCERHMHRGRKRPVQLVVE 125 69************************************9998875 PP
2	QLQ	54.4	3.9e-19	15	50	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k Zjn_sc00060.1.g02430.1.sm.mkhc 15 AFTAMQLQELEQQSRVYQYMAARVPVPTHLIFPIWK 50 8*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.2E-8	14	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.888	15	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.2E-12	15	49	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.049	81	125	IPR014977	WRC domain
Pfam	PF08879	1.1E-19	82	120	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MKALVASITD GAGAAFTAMQ LQELEQQSRV YQYMAARVPV PTHLIFPIWK SVTGASSEGA 60 QKYPTLMGLA TLCLDFGEDP EPEPGRCRRT DGKKWRCWRS TIQNEKYCER HMHRGRKRPV 120 QLVVEDDEPD SASGSKTTPG KADDKSANNM KLDVAAPASV EST

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269\|PubMed:24854713}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800926.1	1e-108	growth-regulating factor 11-like
Swissprot	A5HEG9	1e-103	GRF10_MAIZE; GRF-interacting factor 10
TrEMBL	A0A2S3H2A3	1e-107	A0A2S3H2A3_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EVY2	1e-107	A0A2T7EVY2_9POAL; Uncharacterized protein
TrEMBL	A0A3L6QSN3	1e-107	A0A3L6QSN3_PANMI; Growth-regulating factor 11-like
STRING	Pavir.Bb02610.1.p	1e-108	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6735	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-30	growth-regulating factor 5

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Zhang D, et al. GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. Plant Cell, 2018. 30(2): p. 360-374 [PMID:29437990]