PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00060.1.g01210.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 651aa    MW: 69844 Da    PI: 9.2348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00060.1.g01210.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-18285332148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg W++eEde+l+++v+ +G  +W++++++ g+ R++k+c++rw +yl
  Zjn_sc00060.1.g01210.1.am.mk 285 RGLWSPEEDEKLLRYVTAHGHSCWSSVPKHAGLQRCGKSCRLRWINYL 332
                                   788*******************************************97 PP
2Myb_DNA-binding48.42.1e-15338381146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg ++ +E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Zjn_sc00060.1.g01210.1.am.mk 338 RGTFSDQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 381
                                   899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-27276335IPR009057Homeodomain-like
PROSITE profilePS5129418.549280332IPR017930Myb domain
SuperFamilySSF466891.2E-27283379IPR009057Homeodomain-like
SMARTSM007179.9E-14284334IPR001005SANT/Myb domain
PfamPF002498.0E-16285332IPR001005SANT/Myb domain
CDDcd001671.36E-11288332No hitNo description
PROSITE profilePS5129425.203333387IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-24336388IPR009057Homeodomain-like
SMARTSM007173.6E-15337385IPR001005SANT/Myb domain
PfamPF002495.6E-14338381IPR001005SANT/Myb domain
CDDcd001679.11E-11340380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MPPTIQAAIR RQVQAASRTP ETNQNTTGQV QDTAGETEST QSSARTTHRA RTQRGGRSRN  60
GERSTGMGSL RRALEYIWVP SPSMAPMIVG VAGILLPALL SCPADGRPGC CEEATARGRG  120
VVGALAREEW PCLYLLGFRG LLLGRKEPLS FHHNSAYTSN KQTPKKKGDR GILHLKLRAS  180
TASAGRLTRR NASTSTTVQQ VTFSNDRAAS YAAPTPTVWA SIDRSWVYFS CASRVPAGRQ  240
LPCNASLPIG RDCHNPYTVG GEGRRGRRGR PAMGHHCCSK QKVKRGLWSP EEDEKLLRYV  300
TAHGHSCWSS VPKHAGLQRC GKSCRLRWIN YLRPDLKRGT FSDQEERTII DVHRILGNRW  360
AQIAKHLPGR TDNEVKNFWN SCIKKKLIAQ GLDPKTHNLL PASRSLLHGN GANPSNPTQF  420
HHPNGGSAVA ATTPPFTISS PTKPAFDALT VVPPPEVAPA LYDLPNPGML MPQDQAAVAT  480
IPGYPYSDRG HGVLMSFRDQ NAGLQGSMDF MNGSSSSSSM DHAVGMQNGN GFSQGMSAAF  540
MDETAAMWAA TAAVDPGMGA GMEMVQQPPP PPPPQELVQG EVVSSPTVMN GGGAVAEKSL  600
DMMDVSSVYS GVGTNAAFDL ELMGPCGLFC SGGGGGCSCG RNDIDHLQWD C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-312853877108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0993902e-45AF099390.1 Zea mays clone ZmMYBIF28 R2R3MYB-domain protein mRNA, partial cds.
GenBankAP0040062e-45AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06.
GenBankAP0042592e-45AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149632e-45AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-45CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802845.10.0transcription factor MYB83-like
TrEMBLA0A1E5WB830.0A0A1E5WB83_9POAL; Transcription factor MYB86
STRINGSi030152m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-81myb domain protein 67