PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00058.1.g03630.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 331aa    MW: 35290.2 Da    PI: 7.1786
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00058.1.g03630.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix575e-18114201186
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtses 75 
                                     +Wt+  +  L++a++++ e+l+rg+l++ +We+v++++     ++   +s +qCk+k++nl+kryk + ++  +  s++
  Zjn_sc00058.1.g03630.1.am.mkhc 114 EWTDGAIGSLLDAYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKTSGVKSVEQCKNKIDNLKKRYKVECQRLAG--SGA 190
                                     5*************************************7765333445799***************99999998..688 PP

                        trihelix  76 sstcpyfdqle 86 
                                     +s++p+f+++e
  Zjn_sc00058.1.g03630.1.am.mkhc 191 TSHWPWFRKME 201
                                     889*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-21112203No hitNo description
Gene3DG3DSA:3.40.1160.107.4E-6256293IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MASCDDDFGL LADDAHPTPP PQPPTVQQPA PQLCFADAAA AASATTGPFV PAQEESNHHA  60
ERDKAAPSGK RGREEFNSDG GEYSSYINSS GGGGKKGRGG GGGGSSDYRK DREEWTDGAI  120
GSLLDAYTDR FEQLNRGNLR GRDWEDVAAA VTDGQGKTSG VKSVEQCKNK IDNLKKRYKV  180
ECQRLAGSGA TSHWPWFRKM EQIVGNSASP ASSKPLVTSD DDKARQMPQH SSKRYTVSCA  240
APPNVVGASR GNPFSNPRWK RVLLKIGGTA LAGEAPQNVD HKVVMLIARE VQVACHHVVI  300
FNMLEPGNIS RAICGDQIGL GCVQGMETDG I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100GGKKGRGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149601e-97AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-97CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668441.11e-134uncharacterized protein LOC100383551 isoform X1
TrEMBLA0A3L6PXU11e-134A0A3L6PXU1_PANMI; Uncharacterized protein
STRINGGRMZM2G002978_P021e-132(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.25e-62Trihelix family protein