PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00058.1.g01920.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 18881.2 Da PI: 4.8628 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.5e-17 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+Wv eIr p g ++r++lg+f +ae+Aa a++ a+++l+g Zjn_sc00058.1.g01920.1.sm.mk 27 QYRGVRKRK-WGKWVTEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 76 69****999.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.56E-21 | 27 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.406 | 27 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-35 | 27 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 27 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.44E-28 | 28 | 84 | No hit | No description |
Pfam | PF00847 | 2.2E-11 | 28 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MAATDLLLLP ATSTIAGGGG GGSGQQQYRG VRKRKWGKWV TEIRQPGTKT RIWLGSFESA 60 EMAAVAHDVA ALRLRGRDAQ LNFPGSAADR VRREPALVAE ARCHEALYEF GGLQAGPGRA 120 GELAGSDEEF DLDLGSPRLW AEMAEAMLLD PPRWDTGVSD AEVAQCWSPG SLWDAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-17 | 26 | 84 | 4 | 63 | ATERF1 |
3gcc_A | 9e-17 | 26 | 84 | 4 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958135 | 6e-71 | EU958135.1 Zea mays clone 1674836 dehydration-responsive element-binding protein 1D mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823072.1 | 7e-67 | ethylene-responsive transcription factor ERF027-like | ||||
TrEMBL | A0A0A9BXV1 | 2e-71 | A0A0A9BXV1_ARUDO; Uncharacterized protein | ||||
STRING | TRIUR3_32168-P1 | 6e-57 | (Triticum urartu) | ||||
STRING | LPERR04G10650.1 | 2e-56 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-21 | ERF family protein |