PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00058.1.g01640.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 447aa MW: 48755.5 Da PI: 9.3394

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00058.1.g01640.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.8	1.3e-13	71	152	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessst 78 W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ ++ g+++ s +qCk++++ l+k+yk +++ + + + Zjn_sc00058.1.g01640.1.sm.mk 71 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYSKapkSDVQCKNRIDTLKKKYKVERAKQVS-------S 144 ***********************************87788876222667************99887775.......5 PP trihelix 79 cpyfdqle 86 +++fd+l+ Zjn_sc00058.1.g01640.1.sm.mk 145 WQFFDRLD 152 99999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.2E-23	69	153	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MDDDDDVSGS ASPSPDSSPA ASALPVADPV TVAAAPPGGA FALALPIQRT AASLYPTSGG 60 GGGGGGREDA WSEGATSALI DAWGERFVAL GRGSLRHPQW QEVADAVSSR DGYSKAPKSD 120 VQCKNRIDTL KKKYKVERAK QVSSWQFFDR LDVLLAPTYG QKPAAAGQKH VPNGRNPVHT 180 ALRVGFPHPQ RSRMPLMPSA VKRREPSPEP SASLESSDGF PPPALPVANG KRRRTDEDHG 240 DGDSDHERAQ GLRELSMVIR RLGEAYERVE TAKLEQAMET ERQRMEFARE LESQRVQFFL 300 NAQMDLTQSK NQSSPAAATI PSSAKTVGGG SRRIMDPMFI KAITYWRVWG TVLRTVSPWA 360 SDYKAYLNIW AGALVSFTDE RSKKITEKGK EATSHHDHYG MDKQRVGLDF SYRSPLRDDE 420 TRNLPLHYGS KAQQVCVAAA PLQSSST

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MDDDDDVSGS ASPSPDSSPA ASALPVADPV TVAAAPPGGA FALALPIQRT AASLYPTSGG  60
GGGGGGREDA WSEGATSALI DAWGERFVAL GRGSLRHPQW QEVADAVSSR DGYSKAPKSD  120
VQCKNRIDTL KKKYKVERAK QVSSWQFFDR LDVLLAPTYG QKPAAAGQKH VPNGRNPVHT  180
ALRVGFPHPQ RSRMPLMPSA VKRREPSPEP SASLESSDGF PPPALPVANG KRRRTDEDHG  240
DGDSDHERAQ GLRELSMVIR RLGEAYERVE TAKLEQAMET ERQRMEFARE LESQRVQFFL  300
NAQMDLTQSK NQSSPAAATI PSSAKTVGGG SRRIMDPMFI KAITYWRVWG TVLRTVSPWA  360
SDYKAYLNIW AGALVSFTDE RSKKITEKGK EATSHHDHYG MDKQRVGLDF SYRSPLRDDE  420
TRNLPLHYGS KAQQVCVAAA PLQSSST

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197552.1	1e-152	trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	4e-37	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	F2CYX6	1e-153	F2CYX6_HORVV; Predicted protein
STRING	Traes_2BL_0C45635DD1.4	1e-149	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2404	30	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11100.1	2e-33	sequence-specific DNA binding transcription factors