PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00058.1.g00790.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 535aa MW: 58545.6 Da PI: 9.8617 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 265 | 312 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl Zjn_sc00058.1.g00790.1.am.mk 265 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAKAGLQRCGKSCRLRWTNYL 312 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 318 | 363 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Zjn_sc00058.1.g00790.1.am.mk 318 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 363 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 256 | 315 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.026 | 260 | 312 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.9E-30 | 262 | 359 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 264 | 314 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 265 | 312 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.26E-12 | 267 | 312 | No hit | No description |
PROSITE profile | PS51294 | 25.891 | 313 | 367 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-26 | 316 | 367 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 317 | 365 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-16 | 318 | 363 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-11 | 320 | 363 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MHMCHDDRHI DDAFRPAVTV SWNGFRRRIV RSCITVAWRL GEWFSASSGR SSVDRERKHM 60 QQQQRRRRHR STTRMPSSWE RARHPYGVHL TVQERDATNS PGIWTIGGGA EPHPSGERPQ 120 ELNAHPLSGG SRSAATVPRR RGSERREPVV VHRAEHAPEG NPRSALARTA GTLTSRPRRA 180 GIAVQEEDIA PRPAATPLFM PHSRLTPTST PTSKGQGNHH TSAPACCQKG QDLSQSIALI 240 DWGAIKGKRT GMGRSPCCEK EGLKKGPWTP EEDQKLLAYI EQHGHGCWRS LPAKAGLQRC 300 GKSCRLRWTN YLRPDIKRGK FSLQEEQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN 360 THLKKRLAKM GIDPVTHKPR SDTLAAGGGG AQHAKAAAHL SHTAHFSETA ALASVLEAHG 420 AAAARAALQP MQAFEEEACG NKEQQHWGDV DVADAGFAGV GFTGLLLDGS LSQEDLRPAA 480 GRDHGGADAG LQETEEDNNY WNSILNLVNS SAATASMPTS AVAPVAEAYS PALEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-26 | 263 | 367 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 67 | RERKHMQQQQRRRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360378 | 0.0 | AK360378.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1116O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975862.1 | 1e-134 | transcription factor MYB16 | ||||
TrEMBL | K3Y811 | 1e-133 | K3Y811_SETIT; Uncharacterized protein | ||||
STRING | Si010352m | 1e-134 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-86 | myb domain protein 16 |