PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00057.1.g01070.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 318aa    MW: 34481.9 Da    PI: 10.5421
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00057.1.g01070.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05146168223
                                   EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                    Cp Cg++F+  +++++H+   H
  Zjn_sc00057.1.g01070.1.sm.mk 146 ACPQCGEVFTKAESMEHHQAIrH 168
                                   6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280145168IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974145173IPR007087Zinc finger, C2H2
SuperFamilySSF563997.19E-11170314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MALATLLLPS SSSASSASSA SKAPAGDHSV SRRHQQHHHH GNKRKKKPPP SPQPSFSPRT  60
PPGAGSRRAM AQKSPKVATA KSTLYPQHHR VPSKKASTSS SSSSSSSWEQ VKSLLSCRSA  120
TAAARCRAIN VEPMSRRYPR PRELCACPQC GEVFTKAESM EHHQAIRHAV SELGPEDSGR  180
NIVEIIFKSS WQKRDRPICQ IERILKVHNA PRTVARFEAY RDAVRARSGR AHDCGSAAGP  240
GVNNGGYRAM LVCRVIAGRV RRDASTGIAT EEEEGPFDSV AGEDAASSSV YGNLEELFVT  300
NPRAILPCFV VIYRVLES
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856071e-115BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628578.12e-66PREDICTED: uncharacterized protein LOC104118897
RefseqXP_019153362.12e-66PREDICTED: uncharacterized protein LOC109149815
TrEMBLA0A0E0KM764e-98A0A0E0KM76_ORYPU; Uncharacterized protein
STRINGOPUNC04G00760.17e-99(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-43C2H2-like zinc finger protein