PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00056.1.g04480.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 709aa MW: 75062.3 Da PI: 5.7955

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00056.1.g04480.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	247.5	5.4e-76	337	688	2	367
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 + L+++A+av+ g+ a+++Larl+++ g+p++R a+y++eAL l++ + + + ts+ +++ +l+a+k Zjn_sc00056.1.g04480.1.sm.mk 337 LDELVAAAKAVEIGNSIGAREILARLNQQLPLIGKPFHRSASYLMEALLLALTD-----GNNGSNRLTSPLDVALKLSAYK 412 578*************************************************.....55667777777889**** PP GRAS 83 lfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskee 157 fs++sP+l+f+++ta qa+l++++ +++ iiDfd++ G+QW ++lq+La R+ + p++++T+++s++s++ e Zjn_sc00056.1.g04480.1.sm.mk 413 SFSDLSPVLQFANFTATQALLDEIACTtaSCIRIIDFDLGVGGQWSSFLQELAHRRsiggVSLPMFKLTAFVSSASHHPLE 493 ******************87755559*******************9997876679************** PP GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237 l+ ++++L++fA+ lg+ fef+++ +l++++ eL + p+E +aV+l + sl+ +L+lvk+l Pk Zjn_sc00056.1.g04480.1.sm.mk 494 LHLIQDNLSQFASDLGILFEFTAI---NLDAFDSAELiAPTPDEIIAVCLPVGCSVHT---PSLSM----LLQLVKQLAPK 564 *******************9...777776666615566****99766554...55555....******* PP GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318 +vv +++ d+++ +F ++f+++++ ++ l+dsl+a ++++++++k+ r+l++++++++v + ++ e++ Wr + Zjn_sc00056.1.g04480.1.sm.mk 565 IVVAIDHGNDRGDLPFSQHFMNCFQSCMFLLDSLDAA-GTDADAASKIGRFLIQPRVEDAVLGRRRA-----EKAIAWRTA 639 ******************************999.8999***************976665.....9999* PP GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 +++aGF p+pls+ a+ qa++ll++v+++g++ve+ l l+W++ +L Zjn_sc00056.1.g04480.1.sm.mk 640 FTSAGFAPMPLSNLAEVQADCLLKRVQVRGFHVEKCGMGLALYWQRGEL 688 *******************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.632	310	675	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-73	337	688	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MSAAPFTAEG NGAGSIEALL CWPANKGRGS VELTSVLDSR WSPSPPNSTA MMSSSQGGAA 60 AADSTGVPAA SENSGGADRN EEWSGGDLPP IPGSLDVGFA RDEVGWDAML SDAAAAAGQE 120 QTFLNWILAA PGDMEPPPPA AALQQQQLLG KAAGFGFPAS DALGFSQQLH LGGGASAGAL 180 ASDLSSPGAR SLTSSSGSSS KATSSFGLLP AEATLHPSPA TTKPFHDGAA IKRPLAGVPT 240 PDLILNQHQP TPAASFFMPF PSFPDHQQQP HLPPPKRHHS MPDNLFLLNN QLQPPLPQCL 300 PFPTLHTTAP FQLQPSLQPP RGAMKTTAAA AQQQQLLDEL VAAAKAVEIG NSIGAREILA 360 RLNQQLPLIG KPFHRSASYL MEALLLALTD GNNGSNRLTS PLDVALKLSA YKSFSDLSPV 420 LQFANFTATQ ALLDEIACTT ASCIRIIDFD LGVGGQWSSF LQELAHRRSI GGVSLPMFKL 480 TAFVSSASHH PLELHLIQDN LSQFASDLGI LFEFTAINLD AFDSAELIAP TPDEIIAVCL 540 PVGCSVHTPS LSMLLQLVKQ LAPKIVVAID HGNDRGDLPF SQHFMNCFQS CMFLLDSLDA 600 AGTDADAASK IGRFLIQPRV EDAVLGRRRA EKAIAWRTAF TSAGFAPMPL SNLAEVQADC 660 LLKRVQVRGF HVEKCGMGLA LYWQRGELRM RATRNPEYQM SKTCPSGVE

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MSAAPFTAEG NGAGSIEALL CWPANKGRGS VELTSVLDSR WSPSPPNSTA MMSSSQGGAA  60
AADSTGVPAA SENSGGADRN EEWSGGDLPP IPGSLDVGFA RDEVGWDAML SDAAAAAGQE  120
QTFLNWILAA PGDMEPPPPA AALQQQQLLG KAAGFGFPAS DALGFSQQLH LGGGASAGAL  180
ASDLSSPGAR SLTSSSGSSS KATSSFGLLP AEATLHPSPA TTKPFHDGAA IKRPLAGVPT  240
PDLILNQHQP TPAASFFMPF PSFPDHQQQP HLPPPKRHHS MPDNLFLLNN QLQPPLPQCL  300
PFPTLHTTAP FQLQPSLQPP RGAMKTTAAA AQQQQLLDEL VAAAKAVEIG NSIGAREILA  360
RLNQQLPLIG KPFHRSASYL MEALLLALTD GNNGSNRLTS PLDVALKLSA YKSFSDLSPV  420
LQFANFTATQ ALLDEIACTT ASCIRIIDFD LGVGGQWSSF LQELAHRRSI GGVSLPMFKL  480
TAFVSSASHH PLELHLIQDN LSQFASDLGI LFEFTAINLD AFDSAELIAP TPDEIIAVCL  540
PVGCSVHTPS LSMLLQLVKQ LAPKIVVAID HGNDRGDLPF SQHFMNCFQS CMFLLDSLDA  600
AGTDADAASK IGRFLIQPRV EDAVLGRRRA EKAIAWRTAF TSAGFAPMPL SNLAEVQADC  660
LLKRVQVRGF HVEKCGMGLA LYWQRGELRM RATRNPEYQM SKTCPSGVE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-19	336	685	4	365	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824521.1	0.0	scarecrow-like protein 6
TrEMBL	A0A2T8IDF8	0.0	A0A2T8IDF8_9POAL; Uncharacterized protein
STRING	GRMZM5G825321_P02	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	2e-78	GRAS family protein