PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g04250.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 273aa    MW: 29346 Da    PI: 8.1117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g04250.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18107156255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Zjn_sc00056.1.g04250.1.am.mk 107 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 156
                                   69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-12107156IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-21107164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-32107164IPR001471AP2/ERF domain
PROSITE profilePS5103222.998107164IPR001471AP2/ERF domain
SMARTSM003809.9E-36107170IPR001471AP2/ERF domain
PRINTSPR003671.3E-10108119IPR001471AP2/ERF domain
CDDcd000185.58E-30108164No hitNo description
PRINTSPR003671.3E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MFFFHRFPLP RHVSSAPAPH HKTQRTPLCS SPVLHCLPSH QTQLLRHHRC CLAASKAMDD  60
ASAHEPESPT SASSTSSSSS FSTAVGAKTP KKRPRKDTDQ EGCRHPTYRG VRMRSWGKWV  120
SEIREPRKKS RIWLGTFATA EMAARAHDVA ALAIKGRAAH LNFPGQAHLL PRPASAAPKD  180
VQAAAVLAAA GVFPSDANAK SPESSTNSSD ASASSPPPPP PQEDPDDALF DLPDLLLDLR  240
CGPSSCGTAW AVDDDVAAGG ALFRLEEPLM WED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18102169977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9653061e-108EU965306.1 Zea mays clone 285154 dehydration-responsive element-binding protein 1C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824789.14e-76ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-46ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1N7TB561e-150A0A1N7TB56_9POAL; Transcription factor DREB4.1
STRINGOPUNC04G18530.12e-71(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]