PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g04100.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 311aa    MW: 33981.9 Da    PI: 4.2881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g04100.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19132183256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g++vAeIrdp+    +   r++lg+++ + +Aa+a+++a+ +++g+
  Zjn_sc00056.1.g04100.1.am.mk 132 KYRGVRQRP-WGKYVAEIRDPK----CrgSRVWLGTYDVPIDAARAYDRAAFRMRGA 183
                                   8********.**********83....335**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-31131191IPR001471AP2/ERF domain
PfamPF008473.2E-13132182IPR001471AP2/ERF domain
PROSITE profilePS5103222.734132190IPR001471AP2/ERF domain
CDDcd000182.45E-18132191No hitNo description
SuperFamilySSF541711.63E-21132191IPR016177DNA-binding domain
SMARTSM003805.7E-36132196IPR001471AP2/ERF domain
PRINTSPR003671.5E-13133144IPR001471AP2/ERF domain
PRINTSPR003671.5E-13172192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDFTGDADYF FDLDFIREHL LGSDNGVPMT SWVVSDDSSF PVLPPPAAEP AFQHVPFLQQ  60
QQQQPEWYMD MAHDYTNAAP APAAAGEEAC GAQEPVQPVM LMFESDPLSP AISYASPAAT  120
EAAPVPIEDF RKYRGVRQRP WGKYVAEIRD PKCRGSRVWL GTYDVPIDAA RAYDRAAFRM  180
RGAKAILNFP NEVGTRGADL LAASAPAPAK KRRTRQEDPD VEVIAVVSKA AEIVEVPSWT  240
STPVSSASSP SSTSTFETLE IVASTVTSAA SMTASDGAEW AFPETPSSWS WEQSWEELLR  300
GLPPLSPHPE F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-25131195468ATERF1
3gcc_A6e-25131195468ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178351.12e-79ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3B6CB951e-79A0A3B6CB95_WHEAT; Uncharacterized protein
TrEMBLA0A446MLS71e-79A0A446MLS7_TRITD; Uncharacterized protein
STRINGTraes_2BL_859E9B1DA.28e-80(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.18e-24ethylene responsive element binding factor 5