PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g03860.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 182aa    MW: 20061.5 Da    PI: 9.7321
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g03860.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.7e-17741135
                            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                    C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Zjn_sc00056.1.g03860.1.am.mkhc  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRFRTKGS 41
                                    ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.5E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-12547No hitNo description
CDDcd002028.20E-14640No hitNo description
PfamPF003204.0E-15741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.583740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.2E-13741IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRFRTKG SLANYTPMHR RFDIVDDEPR  60
VSRLRLPASK PKGQKSKKIP KNSSKENRPF CAQNFHRMGD AEPSNLSSSG SGISYSESYA  120
PYSAADASEM TGPAQSHAWE SLVPSKKRSC INRPKASSVE KLAKDLNSIM HEEQTESNHE  180
ES
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825662.15e-89GATA transcription factor 26-like isoform X1
RefseqXP_025825663.15e-89GATA transcription factor 26-like isoform X2
SwissprotQ8W4H16e-49GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2T7CWQ21e-87A0A2T7CWQ2_9POAL; Uncharacterized protein
TrEMBLA0A2T8ICY31e-87A0A2T8ICY3_9POAL; Uncharacterized protein
STRINGPavir.Ga01522.1.p5e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.33e-45GATA transcription factor 26