PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00056.1.g03660.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 1790aa MW: 193856 Da PI: 9.8603

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00056.1.g03660.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.3	2.8e-30	759	843	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+++e+laLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++k+g+ +r++++s +++ Zjn_sc00056.1.g03660.1.am.mk 759 RWPRDETLALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYNRSAKKCKEKFENVHKYYKRTKDGRAGRQDGKS--YRF 837 8*******************************************************************866665..* PP trihelix 82 fdqlea 87 f++lea Zjn_sc00056.1.g03660.1.am.mk 838 FSELEA 843 ***985 PP
2	trihelix	101.8	5.4e-32	1128	1213	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rW+k ev+aLi++r +me r++++ k+p We++s mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+t+ Zjn_sc00056.1.g03660.1.am.mk 1128 RWPKTEVHALIQLRMDMEMRYQETGPKGPMWEDISVGMRRMGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTY 1205 8*******************************************************************8.99* PP trihelix 80 pyfdqlea 87 pyf+qlea Zjn_sc00056.1.g03660.1.am.mk 1206 PYFHQLEA 1213 ****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	5.1E-4	756	818	IPR001005	SANT/Myb domain
Pfam	PF13837	4.1E-21	758	844	No hit	No description
PROSITE profile	PS50090	7.004	758	816	IPR017877	Myb-like domain
CDD	cd12203	2.49E-30	758	823	No hit	No description
SMART	SM00717	0.21	1125	1187	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.027	1127	1185	IPR017877	Myb-like domain
Pfam	PF13837	3.6E-21	1127	1214	No hit	No description
CDD	cd12203	4.76E-29	1128	1192	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1790 aa Download sequence Send to blast
MLQLFTLILV AMLGRKQHLE RSKEKSSPTT MVHAGVGGVY GVSSAPVFCT VEWICRPNPS 60 ISCRAAVRTN RPENLGILGV RRIHWQKGRG LPRRCCAQGA FPPQNVREVT RGDGHAIRTI 120 GGHYRASSAA LPVKLDQFAS RMPASCQVRT PCSPVIDWIL DWIQSCRRAL YCCYLSDSEP 180 QRRSAVTASS SALELWGTTA HGRFRVVSVS VTVVLLLGVV RWAARARTTR STSECRVTFG 240 LPVSGASNAD GDFVAPRAPA PDRVWGLDRR SREDRIEAHM SRLSDSMEGW EPPAALFCGT 300 AVWPCAARAR ERLRSSDRRL IHHACTITAE RAVASYSQSG SLPGLRAGPG DRGNMLGPCR 360 CWCGSYSCGA GANELAGRGV CCASRGFMMD EATGTAGSSS SSSQPTGIAC MRATGIELNQ 420 IRMWRPRLAR GTGHANKVTR YQTISSEIRL AGRQAGSVYF VGAFSAPSQS PTICPPWRRG 480 QSTFLNALVL RAALDMMNLA PHAGTYAFLH PAPQLPTREV RSPRGCDMVH RGRQTRCCCC 540 AWLWFPWAAD RERGRVLPFP HTSGAPRRLC LLLSSFFPSW TLSSSFFTVC RSSFYCIPSP 600 PCPSQLVPAL LFQFHPLPPI SIPQPLVSLS SPTPHSLGVC PWERETEEGD RAARQASWPS 660 KTATRHSSPR CRARRGGEGE LLQSSGEEGE LVVVPGAAVV APMQQHQGEG SPRPPSSQQL 720 RPSYKEFAGM SGTSGAGGGF RDDEMLGGGS GSGASGGNRW PRDETLALIR IRSEMDATFR 780 DATLKGPLWE DVSRKLADLG YNRSAKKCKE KFENVHKYYK RTKDGRAGRQ DGKSYRFFSE 840 LEALHAAGAG AAPQPSASSA PQLHALAAPE SEPPPTNSMP PPAGPMQLAP ISSVAPVPAP 900 LELPPQQPLN LQGLRFSSMS DSESDGESDD DDDMPEEMGG GQDHLGKRKR GGGGSKKLMS 960 FFEGLLQQVT ERQEEMQRRL LETMEQREEA WRRQEVALLN REQEQLAQEH AAAASRDAAI 1020 IAFLQRIGGH SVQPSTAVFV AAQKHVQTPP PPPKQTPHQQ RKPISASPLQ QQPPQQQYQE 1080 ISPQKASTPR GAPPIPAFGA STLELAPSSE HHVDSGIGGE GGAAASSRWP KTEVHALIQL 1140 RMDMEMRYQE TGPKGPMWED ISVGMRRMGY NRSSKRCKEK WENINKYYKK VKESNKKRPE 1200 DSKTYPYFHQ LEAIYRMKQQ GGGTAAAAAP VFPDQLNQSR HEIEGKNIND DKRNNGGSGG 1260 GTQVTASNGE REKLREQAHA RVFLIREFNR SLSMPTLSQH PLTRDSHVSK IGVRVNFAVT 1320 SISDVRVPTV RTLTSQLMTN ESIAHLDLDP ELVLRAPGTK LLASDLLASP TAVTAGTRAR 1380 RCVGAATPRS PHPPDRPHDS PLVNSPWILY RVARPTTRGG GGQVCALLAV SAFVFMAAAV 1440 VSASCAPRGF HALRMPHIAR NGGKPPESGT RGPGSRTDES HCGLWTARRG CGLFAYARRG 1500 GDLRKRGEMG AASSRVAPAE PVGLELADDG NAAARQLSWA EVETATAGFT SRQKKGTLCL 1560 SGVQSLCTFR FRSTGKVEIT CGYVDLASGQ ASATSKGQHA STGGQPSAFC VVPVLLWQLC 1620 SRGLTACWNS HSAAPSVLLG HGFSDELPAF RSGTRVATAP GSSVSIRSTL FSCWAFSCLN 1680 DAERVSGPKA NAHFPGQRRG RRPRRPAGHL DVDECMLVPR GLVGPASNLS LVVTRSSSIT 1740 FSFSTGGRGW GVHVLQEMKR PCPSCAAPSP VPSSSLSERN SEPTEEMCRL

Sequence ? help Back to Top

Protein Sequence Length: 1790 aa Download sequence Send to blast

MLQLFTLILV AMLGRKQHLE RSKEKSSPTT MVHAGVGGVY GVSSAPVFCT VEWICRPNPS  60
ISCRAAVRTN RPENLGILGV RRIHWQKGRG LPRRCCAQGA FPPQNVREVT RGDGHAIRTI  120
GGHYRASSAA LPVKLDQFAS RMPASCQVRT PCSPVIDWIL DWIQSCRRAL YCCYLSDSEP  180
QRRSAVTASS SALELWGTTA HGRFRVVSVS VTVVLLLGVV RWAARARTTR STSECRVTFG  240
LPVSGASNAD GDFVAPRAPA PDRVWGLDRR SREDRIEAHM SRLSDSMEGW EPPAALFCGT  300
AVWPCAARAR ERLRSSDRRL IHHACTITAE RAVASYSQSG SLPGLRAGPG DRGNMLGPCR  360
CWCGSYSCGA GANELAGRGV CCASRGFMMD EATGTAGSSS SSSQPTGIAC MRATGIELNQ  420
IRMWRPRLAR GTGHANKVTR YQTISSEIRL AGRQAGSVYF VGAFSAPSQS PTICPPWRRG  480
QSTFLNALVL RAALDMMNLA PHAGTYAFLH PAPQLPTREV RSPRGCDMVH RGRQTRCCCC  540
AWLWFPWAAD RERGRVLPFP HTSGAPRRLC LLLSSFFPSW TLSSSFFTVC RSSFYCIPSP  600
PCPSQLVPAL LFQFHPLPPI SIPQPLVSLS SPTPHSLGVC PWERETEEGD RAARQASWPS  660
KTATRHSSPR CRARRGGEGE LLQSSGEEGE LVVVPGAAVV APMQQHQGEG SPRPPSSQQL  720
RPSYKEFAGM SGTSGAGGGF RDDEMLGGGS GSGASGGNRW PRDETLALIR IRSEMDATFR  780
DATLKGPLWE DVSRKLADLG YNRSAKKCKE KFENVHKYYK RTKDGRAGRQ DGKSYRFFSE  840
LEALHAAGAG AAPQPSASSA PQLHALAAPE SEPPPTNSMP PPAGPMQLAP ISSVAPVPAP  900
LELPPQQPLN LQGLRFSSMS DSESDGESDD DDDMPEEMGG GQDHLGKRKR GGGGSKKLMS  960
FFEGLLQQVT ERQEEMQRRL LETMEQREEA WRRQEVALLN REQEQLAQEH AAAASRDAAI  1020
IAFLQRIGGH SVQPSTAVFV AAQKHVQTPP PPPKQTPHQQ RKPISASPLQ QQPPQQQYQE  1080
ISPQKASTPR GAPPIPAFGA STLELAPSSE HHVDSGIGGE GGAAASSRWP KTEVHALIQL  1140
RMDMEMRYQE TGPKGPMWED ISVGMRRMGY NRSSKRCKEK WENINKYYKK VKESNKKRPE  1200
DSKTYPYFHQ LEAIYRMKQQ GGGTAAAAAP VFPDQLNQSR HEIEGKNIND DKRNNGGSGG  1260
GTQVTASNGE REKLREQAHA RVFLIREFNR SLSMPTLSQH PLTRDSHVSK IGVRVNFAVT  1320
SISDVRVPTV RTLTSQLMTN ESIAHLDLDP ELVLRAPGTK LLASDLLASP TAVTAGTRAR  1380
RCVGAATPRS PHPPDRPHDS PLVNSPWILY RVARPTTRGG GGQVCALLAV SAFVFMAAAV  1440
VSASCAPRGF HALRMPHIAR NGGKPPESGT RGPGSRTDES HCGLWTARRG CGLFAYARRG  1500
GDLRKRGEMG AASSRVAPAE PVGLELADDG NAAARQLSWA EVETATAGFT SRQKKGTLCL  1560
SGVQSLCTFR FRSTGKVEIT CGYVDLASGQ ASATSKGQHA STGGQPSAFC VVPVLLWQLC  1620
SRGLTACWNS HSAAPSVLLG HGFSDELPAF RSGTRVATAP GSSVSIRSTL FSCWAFSCLN  1680
DAERVSGPKA NAHFPGQRRG RRPRRPAGHL DVDECMLVPR GLVGPASNLS LVVTRSSSIT  1740
FSFSTGGRGW GVHVLQEMKR PCPSCAAPSP VPSSSLSERN SEPTEEMCRL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055033	1e-100	BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	3e-37	GT-2-like 1