PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g02530.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 835aa    MW: 89992.4 Da    PI: 7.0181
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g02530.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.25.5e-22124225199
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f k+lt+sd+++ g +++p+ +ae          +++ +   + ++d +g +W++++i+r++++r++lt+GW++Fv+ ++L
  Zjn_sc00056.1.g02530.1.am.mk 124 FAKILTQSDANNGGGFSVPRFCAEGVfpeldyqAEPPVQ--NVFVRDVHGVEWKFRHIFRGTPRRHLLTTGWSQFVNNKKL 202
                                   89*****************9999888****986445555..6*************************************** PP

                                   -TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                                    +gD++vF   + ++++ +v+++r+
  Zjn_sc00056.1.g02530.1.am.mk 203 IAGDSIVFL--RGEDGQIRVGLRRA 225
                                   *********..4499999***9996 PP
2Auxin_resp1064.2e-35279362183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 
                                   aa+ a+ +++Fevv++Prast+eF+v+++ v +a++v++++GmRfkmafe+edss++++ +G +++v+ +dp rWp+S Wr
  Zjn_sc00056.1.g02530.1.am.mk 279 AAKLAAVGQPFEVVHYPRASTPEFCVRAAAVTAAMQVPWCPGMRFKMAFESEDSSRISWfMGSISDVQPADPARWPQSLWR 359
                                   6889999************************************************************************** PP

                    Auxin_resp  81 sLk 83 
                                   +L+
  Zjn_sc00056.1.g02530.1.am.mk 360 LLQ 362
                                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-33118227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-28122230IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-20123224No hitNo description
SMARTSM010194.0E-20124226IPR003340B3 DNA binding domain
PfamPF023623.3E-20124225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901124226IPR003340B3 DNA binding domain
PfamPF065075.4E-30279362IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MLSFAELAGG GGDSQVGAVD KQLWLACAGP MCNVLPVGAA VYYFPQGHAE QASADVDFSD  60
VRVPPLVPCR VAEVRCMAEA ETDEVFAKMR LVPLRLGEPA VDEGEAAAEA VRGAGDDHAR  120
PASFAKILTQ SDANNGGGFS VPRFCAEGVF PELDYQAEPP VQNVFVRDVH GVEWKFRHIF  180
RGTPRRHLLT TGWSQFVNNK KLIAGDSIVF LRGEDGQIRV GLRRAKRVFG ILVNDEGSIS  240
PSGWDPYLGL ARGNATSSSS FGGGFRPRGN IPPEDVLAAA KLAAVGQPFE VVHYPRASTP  300
EFCVRAAAVT AAMQVPWCPG MRFKMAFESE DSSRISWFMG SISDVQPADP ARWPQSLWRL  360
LQVTWDEAKV LKNVKRVCPW LVELVSSMPN LHLPPFSPGP KRARYTGFPL EDQLFDPGFS  420
PQSLTLNHRF VTFPESSAAA GIQGARHAQF ASSFSDLHIG NLQQNLLLSG IRLPTDRHAP  480
SAPTISLDLT VGSPTARQDA PCAPSPGAAT ARQDAPCAPS PGAKKADDVK PPGIMLFGQR  540
ILTEQQIKDA NSSGGLTSPA AAKTKTDSDA EKTPNASEGF RSPSGVIQRS PTKNDSLLSR  600
LRLSTRDDGS KPPSESGQEP GQCKAFVESE TVGRNLDLST LGSFEGLYAH LSAMFSIDHD  660
ELRGHLLHST ASGDVRHVGD EPSQRVRETG AEDHDTDPKL VVKEHQNANR TFWDRWSEFL  720
SDERRRTTLR GDKDGSITLP VPGQQLGRLL CLEGVLDPVL VTTTGAGSAR RRKARPSGSV  780
RTDEARAPSA SARLSPPRCV SHERDDADGC GLSVTTVAVI LVCDRALAFA SKKMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-691838350388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633845.10.0auxin response factor 10
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A1E5VQW10.0A0A1E5VQW1_9POAL; Auxin response factor
STRINGOPUNC04G16630.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-170auxin response factor 16