PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g02420.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 305aa    MW: 33437.6 Da    PI: 8.1581
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g02420.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-111448136
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                                  +g+WT+eEde+lv  v+++G g+W++ +++ g  Rt
  Zjn_sc00056.1.g02420.1.am.mk 14 KGPWTPEEDEILVAHVQRFGHGNWRALPKRAG-ERT 48
                                  79******************************.898 PP

2Myb_DNA-binding43.48e-1497148148
                                   TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+ E++ +++++++lG++      W++Ia++++ gRt++++k+ w+++l
  Zjn_sc00056.1.g02420.1.am.mk  97 RGNFTKAEEDTIIHLHELLGNRyscssPWSAIAARLP-GRTDNEIKNVWHTHL 148
                                   89***********************************.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-24594IPR009057Homeodomain-like
PROSITE profilePS5129412.116956IPR017930Myb domain
SuperFamilySSF466897.9E-101051IPR009057Homeodomain-like
SMARTSM007171.5E-101393IPR001005SANT/Myb domain
PfamPF002492.8E-91448IPR001005SANT/Myb domain
CDDcd001671.99E-81691No hitNo description
SuperFamilySSF466899.39E-1978154IPR009057Homeodomain-like
PROSITE profilePS5129419.64192152IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2395152IPR009057Homeodomain-like
SMARTSM007172.4E-996150IPR001005SANT/Myb domain
PfamPF002491.6E-1297148IPR001005SANT/Myb domain
CDDcd001678.64E-999148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDEILVAHVQ RFGHGNWRAL PKRAGERTQP RLHRLHFSRL  60
AGRRGVLNDE GCVAGLLRCG KSCRLRWINY LRPDIKRGNF TKAEEDTIIH LHELLGNRYS  120
CSSPWSAIAA RLPGRTDNEI KNVWHTHLKK RLDPTKQDHH AAPAVGAGSK KKRKPAAAGP  180
KLGGARKASE EVPGLPATAA PVSPKRSAVS SSVTESTSMT EQGNTGSSGG FARDESFTSS  240
SSEEFQIDES FWSETLSMPL ESFDVPMDSF DVVPVASSSS GGADDMDYWL GVFMETDDVQ  300
ELPQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-20121535109B-MYB
1h8a_C6e-201215225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174KKKRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4700593e-52AF470059.1 Sorghum bicolor P-type R2R3 Myb protein (Myb9) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448188.11e-119transcription factor MYB4
SwissprotQ7XBH41e-102MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A1D8F0K41e-120A0A1D8F0K4_9POAL; MYB protein
STRINGSb06g022660.11e-118(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.19e-65myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]