PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g01910.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 523aa    MW: 57276.9 Da    PI: 9.3531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g01910.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32.1e-19203250148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WTt+Ed+llv+ v+q+G g+W++++++ g++R++k+c++rw +yl
  Zjn_sc00056.1.g01910.1.am.mk 203 KGPWTTQEDKLLVEHVQQHGEGRWNSVSKHTGLKRSGKSCRLRWVNYL 250
                                   79********************************************97 PP
2Myb_DNA-binding537.8e-17256300147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Zjn_sc00056.1.g01910.1.am.mk 256 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 300
                                   8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.614198250IPR017930Myb domain
SuperFamilySSF466892.16E-29201297IPR009057Homeodomain-like
SMARTSM007179.3E-17202252IPR001005SANT/Myb domain
PfamPF002495.5E-18203250IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-23204257IPR009057Homeodomain-like
CDDcd001675.34E-12205250No hitNo description
PROSITE profilePS5129425.396251305IPR017930Myb domain
SMARTSM007176.6E-16255303IPR001005SANT/Myb domain
PfamPF002492.4E-14256300IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-23258303IPR009057Homeodomain-like
CDDcd001672.64E-10260301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
LAGPLSRAEE DDDDDASLGL VIRWRDREAP GRIGEELESA RTALRKVKEV LVVVRGGSKL  60
RVRRGPREFL NPGKETEMGM EIYYYRGEGN THTPYVHRAS STSPVTARQL RTCPSGQVPW  120
MREPASSWGL GRGLRRGGER LGETSSPVPH IYAAAAHSSL IARQHKRKER RAASPASRPW  180
IEIHELTEGQ LAWGGREVDG WRKGPWTTQE DKLLVEHVQQ HGEGRWNSVS KHTGLKRSGK  240
SCRLRWVNYL RPDLKRGKIT PQEESIIVQL HALWGNRWST IARSLPGRTD NEIKNYWRTH  300
FKKGKPSKNI ERARARFLKQ RREMQIQQQQ QLQQLISKVD ENTNHDDGAT RCGTLVEAED  360
RGSAVVDNAC AGTTAAAVTD QSSGQHHQAA APDLAMHDAM MDFMCPMSCG LLLHGAGGHQ  420
GGASAGSCCG STSEEYGSSE EDGATWGSLW NLEDVVGDGG GPGAYAWGRR QRSIARGGEG  480
ARCSYKRASA DSAAAVVLVD NDVGTTTAVL PLRSSSSSGS GLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2620330327126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096201e-125AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824833.11e-119transcription factor MYB8-like isoform X2
TrEMBLA0A3L6PVQ31e-122A0A3L6PVQ3_PANMI; Transcription repressor MYB6-like
STRINGSi010822m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.18e-62myb domain protein 79