PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g01460.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 562aa    MW: 61091.9 Da    PI: 9.145
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g01460.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.6e-07258294437
                      zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                                   r C+ ++ + ++l+C+ +  +lC+ C    H g    H
  Zjn_sc00056.1.g01460.1.am.mk 258 RPCDACGAEAARLYCRADAAFLCAGCDARAH-GpasrH 294
                                   68*************************9999.545557 PP
2zf-B_box21.45.1e-07297339339
                      zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                                    + C+ +e+ +++  C+ +   lC++C   +H+       H++
  Zjn_sc00056.1.g01460.1.am.mk 297 VWLCEVCEHAPASVTCRADAAALCASCDADIHSAnplarrHER 339
                                   679*****************************65677777775 PP
3CCT68.81.4e-23479522144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Zjn_sc00056.1.g01460.1.am.mk 479 REARLMRYREKRKSRRFEKTIRYASRKACAETRPRIKGRFAKRT 522
                                   9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.637255299IPR000315B-box-type zinc finger
SMARTSM003361.4E-9255299IPR000315B-box-type zinc finger
CDDcd000211.38E-7258299No hitNo description
PfamPF006431.5E-5258294IPR000315B-box-type zinc finger
PROSITE profilePS5011910.395295342IPR000315B-box-type zinc finger
PfamPF006432.0E-5297341IPR000315B-box-type zinc finger
CDDcd000211.56E-7298342No hitNo description
SMARTSM003369.5E-10300342IPR000315B-box-type zinc finger
PfamPF062036.0E-18479521IPR010402CCT domain
PROSITE profilePS5101716.618479521IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MQPFSTTTTL AKYQSPEALD LQNVLDAIIL PLSVPPRARI ADTAGEQPSR RPMEIRATSR  60
QPMARCHLFP RRLRRWEWDG RPPPTHGPPV PVASHNLPCL NARPIFLRQR PAFPHPARGR  120
RRCVNHRAYV PVGVGFYRLY RARSRGLDRS GEAGVRLGDG EARKAGTGKH GHWRTNSAPA  180
RRESDSRGQH CLHVAPLKST AGNGVGEAWL RTVSCPAAAT ARYELHCRVR RCRQFRVIAM  240
AGDEKSSVGG SYWGLNTRPC DACGAEAARL YCRADAAFLC AGCDARAHGP ASRHARVWLC  300
EVCEHAPASV TCRADAAALC ASCDADIHSA NPLARRHERF PVAPFYGALA DAPKPFASSA  360
AAAPKPGAAV DDDRSNEAEA ASWLLPEPDH GQKDGSSAEV FFADSDTYLD LDFARSMDDV  420
KAIGVQNCPP EMDLTGAKLF YPDHSVNHSV SSSEAAVVPD AAAASAAPPA PVVSRGRERE  480
ARLMRYREKR KSRRFEKTIR YASRKACAET RPRIKGRFAK RTSAGAAAEA EEEHDEEMYS  540
SAAAALLAPA AADVDYGVVP TF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825843.11e-167zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A2S3I8051e-166A0A2S3I805_9POAL; Uncharacterized protein
STRINGAC233888.1_FGP0021e-163(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.16e-38CONSTANS-like 5