PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00056.1.g00800.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 334aa    MW: 36854.4 Da    PI: 7.9576
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00056.1.g00800.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.11.8e-2645114271
                        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                                     W k+e+l+Li++rrem+ +++++k++k+lWe++s++mre+gf rsp++C++kw+nl k++kk +  +++ 
  Zjn_sc00056.1.g00800.1.sm.mkhc  45 WVKEETLCLIALRREMDAHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEFKKARSYARSS 114
                                     **************************************************************99887764 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.52537101IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.7E-538104IPR009057Homeodomain-like
SuperFamilySSF466893.95E-541102IPR009057Homeodomain-like
SMARTSM007174.1E-641103IPR001005SANT/Myb domain
CDDcd122031.57E-2743108No hitNo description
PfamPF138372.1E-1844134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MLLSGPPPAS TPPLLLPESS GEDGGGHDSS SRAAGSAPKK RAETWVKEET LCLIALRREM  60
DAHFNTSKSN KHLWEAISAR MREQGFDRSP TMCTDKWRNL LKEFKKARSY ARSSAGGAGG  120
NGNAKMAYYK EIEDLLKRRG KAGGSGGGSC GGGAGKSPTS NPKIDSFLQF PTDKGFEDPN  180
IPFGPVEGGD NQVTLGGRVI LVKWGDYTKR IGIDGTAEAI KEAIKSAFGL RTRRAFWLED  240
EDEVVRTLDR DMPIGTYTLH LDNGITIKLC AFEDAERMTV RTEDKTFYTE EDFRDFLTRR  300
HWSLLREYGG YRIADTLDDL RPGAIYQGVR SLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-3939131186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195254.10.0trihelix transcription factor GT-4-like
SwissprotQ9FX531e-118TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A3B6B0T60.0A0A3B6B0T6_WHEAT; Uncharacterized protein
TrEMBLA0A446L7H10.0A0A446L7H1_TRITD; Uncharacterized protein
STRINGTraes_2AL_73E4240F0.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.21e-113Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]