PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00055.1.g01410.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 285aa    MW: 29960.4 Da    PI: 8.9223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00055.1.g01410.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05152174123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C +Cgk+Fs    L  H+r H
  Zjn_sc00055.1.g01410.1.am.mk 152 HVCRKCGKVFSKGTALGGHMRAH 174
                                   79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.63E-6149178No hitNo description
PfamPF139123.1E-8151174IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5151176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.612152179IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSPPLRRLRP DDDDADKGRF VSDDGVRDLR PQSPTRTWES DRTISDDDDD VSPASVLRTE  60
PNERVVGVDG GWATTGKRSR STEGKQAATA APAAKQIPRP LPPPRDDQAP LKYTCKDCGR  120
SGARVLAQDA GTGAQDGGAL AHRGRKSEGR THVCRKCGKV FSKGTALGGH MRAHAGDAAV  180
APVVPEGNKK RCLEPAVDDF VASSTPGLSS AAPIVPEGNK KRCHEPAVDD VAAPPTAGVS  240
SAAPIKTEEA SSPAPHRRSN SSPALRRTCL PPLGILVRRT PSDAD
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18437610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-06C2H2 family protein