PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00053.1.g02710.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 313aa    MW: 33525.9 Da    PI: 10.4921
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00053.1.g02710.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.82.2e-2156145186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtses 75 
                                   +Wt++e+laLiea+r+++e lr+g+l++++W++v++++        +   ++ +qC++k+e+l+kry++++ ++ +r+++ 
  Zjn_sc00053.1.g02710.1.sm.mk  56 CWTHEETLALIEAYRDRWEMLRKGNLRAADWDDVADAVtsrcgrFPTAAPKTGVQCRHKIEKLRKRYRAERGRSAGRSKG- 135
                                   8*************************************998887778889*************************98443. PP

                      trihelix  76 sstcpyfdqle 86 
                                     ++p+++ l+
  Zjn_sc00053.1.g02710.1.sm.mk 136 -PKWPFYQLLH 145
                                   .47****9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2155145No hitNo description
PROSITE profilePS500906.0457119IPR017877Myb-like domain
SMARTSM005956.6E-664152IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSSSSSDLAR DDAVSSPDLP PLAAPVAAAA AAAAAAASSG GGGLGGGSGR RLPPPCWTHE  60
ETLALIEAYR DRWEMLRKGN LRAADWDDVA DAVTSRCGRF PTAAPKTGVQ CRHKIEKLRK  120
RYRAERGRSA GRSKGPKWPF YQLLHVLAGN GAPDPSPNAI VKIKTKGRSP PAAPPSPVSS  180
PSSEEEAVRS RSLHGLISNG GAGSGLRFTI PKASRTRPSS AAATRPDKSS NQGDTESEAM  240
SEVAAALRAV GEGFVRMEER RLELSLQREK ERMEFEMKRT QTMLDAQQLF LEAFLGKQHL  300
PHKKARVSPA MED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659928.11e-156trihelix transcription factor ASIL1
TrEMBLA0A1X7YE921e-155A0A1X7YE92_MAIZE; Uncharacterized protein
STRINGGRMZM2G428470_P011e-156(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.16e-16Trihelix family protein