PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00053.1.g02710.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 313aa MW: 33525.9 Da PI: 10.4921 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.8 | 2.2e-21 | 56 | 145 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtses 75 +Wt++e+laLiea+r+++e lr+g+l++++W++v++++ + ++ +qC++k+e+l+kry++++ ++ +r+++ Zjn_sc00053.1.g02710.1.sm.mk 56 CWTHEETLALIEAYRDRWEMLRKGNLRAADWDDVADAVtsrcgrFPTAAPKTGVQCRHKIEKLRKRYRAERGRSAGRSKG- 135 8*************************************998887778889*************************98443. PP trihelix 76 sstcpyfdqle 86 ++p+++ l+ Zjn_sc00053.1.g02710.1.sm.mk 136 -PKWPFYQLLH 145 .47****9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-21 | 55 | 145 | No hit | No description |
PROSITE profile | PS50090 | 6.04 | 57 | 119 | IPR017877 | Myb-like domain |
SMART | SM00595 | 6.6E-6 | 64 | 152 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MSSSSSDLAR DDAVSSPDLP PLAAPVAAAA AAAAAAASSG GGGLGGGSGR RLPPPCWTHE 60 ETLALIEAYR DRWEMLRKGN LRAADWDDVA DAVTSRCGRF PTAAPKTGVQ CRHKIEKLRK 120 RYRAERGRSA GRSKGPKWPF YQLLHVLAGN GAPDPSPNAI VKIKTKGRSP PAAPPSPVSS 180 PSSEEEAVRS RSLHGLISNG GAGSGLRFTI PKASRTRPSS AAATRPDKSS NQGDTESEAM 240 SEVAAALRAV GEGFVRMEER RLELSLQREK ERMEFEMKRT QTMLDAQQLF LEAFLGKQHL 300 PHKKARVSPA MED |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659928.1 | 1e-156 | trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A1X7YE92 | 1e-155 | A0A1X7YE92_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G428470_P01 | 1e-156 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5689 | 32 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 6e-16 | Trihelix family protein |