PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00053.1.g02050.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 352aa    MW: 36472.4 Da    PI: 7.854
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00053.1.g02050.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.8e-18248282135
                            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Zjn_sc00053.1.g02050.1.sm.mkhc 248 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 282
                                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-16242292IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.227246278IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-14246306No hitNo description
Gene3DG3DSA:3.30.50.101.8E-13246280IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.43E-13247294No hitNo description
PROSITE patternPS003440248273IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15248282IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MASEWEMAMG VDLGMGMSAY HPHHHHHNAF SISTAPMSSH HSGGGGGSYN NYGMPPMGDA  60
MRVDTPLDLS NGTGAHEFFP TAAGAAAMGE PSPTANSSDH QTSLLSFADE FYIPSEEAAE  120
LEWLSKFVDD SYSDIPNYSS AAHAAMAAAV AGNGGGNSTG QDSCVTAAPG RGARSKRSRA  180
TAAAAAAWHS LMPRPPAQSS PSSSCSSSDF PSSCPARPNG SNGSRGKKSP GPGGAPGEVG  240
LEGGVRRCTH CASEKTPQWR TGPLGPKTLC NACGVRFKSG RLVPEYRPAA SPTFVLTQHS  300
NSHRKVMELR RQKELVMIRG SHRDAAAAAA ASAAAGSAGP RPELMFRDYG VC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795835.11e-169GATA transcription factor 2-like
SwissprotO497413e-59GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A1E5UY691e-168A0A1E5UY69_9POAL; GATA transcription factor
TrEMBLA0A2S3INR41e-168A0A2S3INR4_9POAL; GATA transcription factor
TrEMBLA0A2T7C9Z21e-168A0A2T7C9Z2_9POAL; GATA transcription factor
STRINGSi036273m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.18e-45GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]