PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00053.1.g01600.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 642aa    MW: 66973.1 Da    PI: 6.0498
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00053.1.g01600.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.22.8e-892856412374
                          GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                   v++L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+       +a +p ++++++++ +l 
  Zjn_sc00053.1.g01600.1.sm.mk 285 VDQLAEAAKLAEAGDAFGAREILARLNYRlpaAPAAGTPLLRSAFYFKEALRLALSP----NGEAPAPPASTPYDVVLKLG 361
                                   689*************************999455566******************99....55666777888899****** PP

                          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                                   a+k+fsevsP+l+f+hlt+ qa+l+++ g+++vH++Dfdi++G QW++L+q+La R +++  l++T+++sp+s++  el+ 
  Zjn_sc00053.1.g01600.1.sm.mk 362 AYKAFSEVSPVLQFAHLTCVQAVLDELGGANCVHVLDFDIGMGEQWASLMQELAHR-RPATVLKVTALVSPASHHPLELQL 441
                                   *******************************************************9.7889******************** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                                   ++e+L  fA+elgv f+f ++   ++++l++ eL  +  g+a+aV+l +   ++         + +++L+lvk+l +kvvv
  Zjn_sc00053.1.g01600.1.sm.mk 442 IHENLYGFASELGVLFQFAAF---NIDTLDPAELVANAsGDAVAVHLPVGSAHVA--------AMPAILRLVKRLGAKVVV 511
                                   ********************9...9*********88888***********99998........4566************** PP

                          GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                                    v++ +d+++ +F++++++a++ +++l++s++a  ++ +e+++k+Er+l+++++++ v  ++++      +   Wr  + +
  Zjn_sc00053.1.g01600.1.sm.mk 512 SVDHGCDRTELPFAAHLFQAFQSCVSLLESIDAV-GTGAETAAKIERFLVQPDVEQRVVGRHRA---GVDKPLPWRTVFAS 588
                                   *******************************997.8999*******************988887...7777889******* PP

                          GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   aGF pvp s++a++qa++ll+kv+  g+rve++ g l+l+W++ +LvsvSaWr
  Zjn_sc00053.1.g01600.1.sm.mk 589 AGFVPVPASSFAESQAESLLKKVALMGFRVEKRGGVLCLYWQRSELVSVSAWR 641
                                   ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.087258621IPR005202Transcription factor GRAS
PfamPF035149.8E-87285641IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MLFAGSTRDG HTGTLLLQQQ HQQQHQDLGK VSGAAGLIWE PTSVLDQRHS PSPSPPTSAS  60
TLSSPLGSAT AGVAALAGPN AKNHVAPPPP VAGAWPGGAA VEDATGGGKE DWQLTPFDMG  120
LDSAGEGWDP AGAVLSDAPA PTGLGPDHTF LRWFIGGEDA SAGMGGVMDL PVLELDHAPS  180
MVSSAFGSNL TFIPAVEDTK PAPPFGHSPT SFLLHHHPQP HAGLFGSHPS FDAAAAAAPK  240
RSHPMTTAPA PKLPPFPGAV ASAGGFVPAL KPKAEAANDE EAAAVDQLAE AAKLAEAGDA  300
FGAREILARL NYRLPAAPAA GTPLLRSAFY FKEALRLALS PNGEAPAPPA STPYDVVLKL  360
GAYKAFSEVS PVLQFAHLTC VQAVLDELGG ANCVHVLDFD IGMGEQWASL MQELAHRRPA  420
TVLKVTALVS PASHHPLELQ LIHENLYGFA SELGVLFQFA AFNIDTLDPA ELVANASGDA  480
VAVHLPVGSA HVAAMPAILR LVKRLGAKVV VSVDHGCDRT ELPFAAHLFQ AFQSCVSLLE  540
SIDAVGTGAE TAAKIERFLV QPDVEQRVVG RHRAGVDKPL PWRTVFASAG FVPVPASSFA  600
ESQAESLLKK VALMGFRVEK RGGVLCLYWQ RSELVSVSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2931664132375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464970.10.0scarecrow-like protein 6
TrEMBLC5WSJ80.0C5WSJ8_SORBI; Uncharacterized protein
STRINGSb01g029650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-84GRAS family protein