PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00053.1.g00790.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 459aa MW: 50010 Da PI: 9.1737 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 91.7 | 5.4e-29 | 35 | 147 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 f+kv tpsdv+k++rlv+pk++ae++ +++ ++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fv Zjn_sc00053.1.g00790.1.am.mk 35 FEKVVTPSDVGKLNRLVIPKQHAERYfpalgpatsaaaASSEGKGLVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFV 115 99******************************99999977778999*********************************** PP HHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 70 kangLkegDfvvFkld.gr.sefelvvkvfrk 99 k+++L +gD v F + g+ ++++++ ++r+ Zjn_sc00053.1.g00790.1.am.mk 116 KEKRLGAGDAVEFARGvGDaARGRFFIDFRRR 147 *************9655888999999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-37 | 30 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-28 | 32 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.65E-26 | 33 | 128 | No hit | No description |
SMART | SM01019 | 1.3E-20 | 35 | 148 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.93 | 35 | 148 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-27 | 35 | 147 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MEFGRIAAVQ EDPERARGSG GGGGGVVWVE REHMFEKVVT PSDVGKLNRL VIPKQHAERY 60 FPALGPATSA AAASSEGKGL VLSFEDRAGK AWRFRYSYWN SSQSYVMTKG WSRFVKEKRL 120 GAGDAVEFAR GVGDAARGRF FIDFRRRRQD VSFLQPPALQ RLPLPSVPIC PWQDYGTYAP 180 APAPNRQVLF LRPQMPAAVV LASVPARVAA STVEATRSKR LRLFGVNLDT PPVEDDSRVA 240 GTTSTLLQLP SPSSSTSSTT AGKDICSLDL GLGCHGARCG WRRASCDTRP GAVEPSDQCF 300 FPEVDETSPS YLFFSDKITG DAARGRGRSR ASTRKSTPAS TSGVPRHPWN LKPWSFRPAG 360 STHSSMHAAA SQTWQAIAGS HTLTANTHLS PVMALKRPDH HGEQDSCHRH VGPADLLSYM 420 SENTRVQSRA SEDSVETKLG AVAEPDADPC DVYHYSYYE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-51 | 30 | 147 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-51 | 30 | 147 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983810.1 | 1e-119 | putative B3 domain-containing protein Os10g0537100 | ||||
Swissprot | Q8LNN8 | 2e-96 | Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100 | ||||
TrEMBL | A0A1E5V5B2 | 1e-121 | A0A1E5V5B2_9POAL; Putative B3 domain-containing protein | ||||
STRING | Si039972m | 1e-119 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 3e-46 | B3 family protein |
Publications ? help Back to Top | |||
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