PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00050.1.g03340.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 342aa    MW: 37029.4 Da    PI: 6.3243
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00050.1.g03340.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.83.3e-0717751056
                                    HHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
                        Homeobox 10 eqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                                    +++ e+e+  ++  ++ p ++  + LA+k            ++ +qV +WFqNrR+ ++
  Zjn_sc00050.1.g03340.1.sm.mkhc 17 SEVAEMEARLKQlhHSVPGRDVLQSLADKFsasperagrvAVQPKQVWNWFQNRRYSYR 75
                                    56666666666555667888888888888888888888889***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0021781IPR001356Homeobox domain
PROSITE profilePS500719.4261377IPR001356Homeobox domain
CDDcd000861.16E-41375No hitNo description
Gene3DG3DSA:1.10.10.606.2E-61377IPR009057Homeodomain-like
SuperFamilySSF466898.55E-91377IPR009057Homeodomain-like
PfamPF000461.4E-41775IPR001356Homeobox domain
PfamPF167192.7E-21139217IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRPPSSGAP AFRFLPSEVA EMEARLKQLH HSVPGRDVLQ SLADKFSASP ERAGRVAVQP  60
KQVWNWFQNR RYSYRAKGVR PAQQPPPPPS KMTPSGADRV QHATAASAFR AAQTPAAAAG  120
ANPGSTSSAG KGAVEGAPIE FEAKSARDGA WYDVAGFLSH RMFETGDPEV RVRFSGFGAE  180
EDEWVNVRKC VRQRSLPCEA TECVAVLPGD LILCFQEIVP LRKVCRRPET DYRLQILHAS  240
RAAAAASDVH APPREVRMES ASEEKSPAGQ EPVKQHKMMD VNTDEVTMVS DQGEAAGKTA  300
PPTPSAQAET HNNSSSDVDA EPAPVVEVDD ERQVVDKMEE GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-28137217282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-28137217282SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-28137217282SHH1 SAWADEE
4iur_B1e-28137217282SHH1 SAWADEE
4iut_A1e-28137217282SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-28137217282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-28137217282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-28137217282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-28137217282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-28137217282SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.11e-168protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.11e-168protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.11e-168protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.11e-168protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-88SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1D6EP151e-172A0A1D6EP15_MAIZE; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
STRINGSi030167m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-82sequence-specific DNA binding transcription factors;sequence-specific DNA binding