PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00050.1.g03220.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 490aa    MW: 53858.6 Da    PI: 8.8116
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00050.1.g03220.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-05314333120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   ++C  C+k+F+r  n++ H+
  Zjn_sc00050.1.g03220.1.am.mk 314 FSCAVCNKTFNRFNNMQMHM 333
                                   89*****************9 PP
2zf-C2H213.20.00027404426123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y C  Cgk+F  + + ++H +++
  Zjn_sc00050.1.g03220.1.am.mk 404 YACRRCGKRFAVRGDWRTHEKNC 426
                                   89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.36E-5309335No hitNo description
SMARTSM003550.64314336IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-5314333IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055314341IPR007087Zinc finger, C2H2
PROSITE patternPS000280316336IPR007087Zinc finger, C2H2
SMARTSM00355220367399IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-6390424IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.99E-6390424No hitNo description
SMARTSM0035558404424IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704404424IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSEPFYLLCR VAIIVFRPPI PTHELARLRR PACHMRHRSA GWLLLEIEHA PLDTEQEQHR  60
KKLGCSGTSA RRQCARQSSH LMSHGRRACN RSKPTSGGAA RAGSIARRSL VYCRFMNRRK  120
ALEFIGLATA DSVPPPVMHS YRAMHPYSTH QYHHASLPSS KQGGEDNDDD QSMLRLSLWP  180
PGHHQSMAAS PACSSSPSII STTSMTAATA ASYPWLNQQG HYSNGGGGGG MGSSSSSHGS  240
FLFHEQQQQQ EPDVSISLSI APPRSNASAV CGGGFAAPAA LPSTVTTVTP GGSQVPSQYW  300
IPSAAEILVG STQFSCAVCN KTFNRFNNMQ MHMWGHGSQY RKGSESLRGA ITVGTAPPAS  360
LMRLPCYCCA EGCRNNIDHP RARPLKDFRT LQTHYRRKHG ARPYACRRCG KRFAVRGDWR  420
THEKNCGKLW FCVCGSDFKH KRSLKDHVRS FGGGHAPHIA ESVAVEDDED EDDDHEDADQ  480
MDEPSDMVVV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9679760.0EU967976.1 Zea mays clone 312187 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460014.11e-165zinc finger protein WIP6
TrEMBLC5X9191e-164C5X919_SORBI; Uncharacterized protein
STRINGSb02g020840.11e-165(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.14e-99C2H2-like zinc finger protein