PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00050.1.g01950.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 402aa MW: 42331.5 Da PI: 8.4786

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00050.1.g01950.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.6	5.6e-31	145	240	6	107
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 rh ++hTkv+gR+RR+Rl caar+ L++eLG++ d++ti WLlqq++pa++++tgt++ +a ++ +++ + + Zjn_sc00050.1.g01950.1.am.mk 145 PRHRDRHTKVEGRGRRIRLAEACAARIARLTRELGHKNDGETIRWLLQQSEPAVIAATGTGTVPAIAT-TVDGVLRLH--- 221 69**********************************************************88888444.333333333... PP TCP 87 sgkaaksaakskksqksaasa 107 ++ ++a ++q +++ Zjn_sc00050.1.g01950.1.am.mk 222 --SSPPAAVADGDQQPDPKRR 240 ..2222222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-24	147	221	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	21.597	147	201	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MGRIFPSSRL PSISSGPVGR LPLNPTLRDP LSQRRSKNRS RELAQRRAPP NQNKGAESKK 60 PERETKARLA PIRSPLGSPA PDMGEEDVAA FYHAAGNGTV VTDAAVVGID AMGSSEAHGS 120 LMPKPEPAPV EFLGELQVAN RRPAPRHRDR HTKVEGRGRR IRLAEACAAR IARLTRELGH 180 KNDGETIRWL LQQSEPAVIA ATGTGTVPAI ATTVDGVLRL HSSPPAAVAD GDQQPDPKRR 240 RKLQPTRAAA AGATAPPLTS TPTAYYPVVA DPLLQGNGGG AISTSSGLAP ASVPTPPPGA 300 IPFLAIPAPG PGATIDGKQM MKPTAVWMVP PQAGAGGAAN QPTHYWAFPT NPELFSNFQQ 360 QAVYDAGQLV DGGESQHQQL EGHQDGEGEE EDIALTESSS EE

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MGRIFPSSRL PSISSGPVGR LPLNPTLRDP LSQRRSKNRS RELAQRRAPP NQNKGAESKK  60
PERETKARLA PIRSPLGSPA PDMGEEDVAA FYHAAGNGTV VTDAAVVGID AMGSSEAHGS  120
LMPKPEPAPV EFLGELQVAN RRPAPRHRDR HTKVEGRGRR IRLAEACAAR IARLTRELGH  180
KNDGETIRWL LQQSEPAVIA ATGTGTVPAI ATTVDGVLRL HSSPPAAVAD GDQQPDPKRR  240
RKLQPTRAAA AGATAPPLTS TPTAYYPVVA DPLLQGNGGG AISTSSGLAP ASVPTPPPGA  300
IPFLAIPAPG PGATIDGKQM MKPTAVWMVP PQAGAGGAAN QPTHYWAFPT NPELFSNFQQ  360
QAVYDAGQLV DGGESQHQQL EGHQDGEGEE EDIALTESSS EE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	242	PKRRRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803340.1	1e-129	transcription factor PCF2-like
Swissprot	A2YXQ1	4e-80	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	4e-80	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A2T7EUU1	1e-128	A0A2T7EUU1_9POAL; Uncharacterized protein
STRING	Sb02g030260.1	1e-123	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-35	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]