PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00050.1.g01870.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 317aa    MW: 34003.3 Da    PI: 4.1893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00050.1.g01870.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-1850102155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae Aa+a++aa++++ g
  Zjn_sc00050.1.g01870.1.am.mk  50 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEAAARAHDAAMLAMAG 102
                                   579******************9...6445**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1450102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-2851112IPR001471AP2/ERF domain
SMARTSM003804.0E-1951116IPR001471AP2/ERF domain
PROSITE profilePS5103220.94351110IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1851112IPR016177DNA-binding domain
PRINTSPR003676.2E-55263IPR001471AP2/ERF domain
PRINTSPR003676.2E-57692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MCPIKEEMMS PNCNSSSPCS STSSEHHQTV WTSPPKKPAG RTKFRETRHP VFRGVRRRGN  60
AGRWVCEVRV PGRRGCRLWL GTFDTAEAAA RAHDAAMLAM AGAGACLNFA DSAWLLAMPA  120
SFRSLDDVRH AVAEAVEEFQ RREAHAEDDA LSSVATPSSS SVDSCSNDAD EGKESSPAPE  180
DDAVFELDVF NDMSWDLYYA SLAQGMLVEP PCAVAAFGDD GEAHVADISL RSAETSDEEN  240
GCASRPAVDD GGSSPAGKPS SDFAFEFDDG FMFGGMDDAE SYYASLAQGL LVEPPATAAS  300
WEDCESGGTE MALWSYY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7858991e-128AY785899.1 Sorghum bicolor cultivar BTX 623 SbCBF6 (CBF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799274.11e-108dehydration-responsive element-binding protein 1A-like
SwissprotA2Z3896e-95DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBLA0A1N7TB591e-166A0A1N7TB59_9POAL; Transcription factor DREB1.2
STRINGPavir.Ba01280.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-29C-repeat/DRE binding factor 2