PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00050.1.g01190.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SRS
Protein Properties Length: 320aa    MW: 32764.3 Da    PI: 8.6578
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00050.1.g01190.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702220.24.4e-68932433153
                          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelksk 81 
                                      g++sCqdCGnqakkdCah+RCRtCCksrgf+C thvkstWvpa+krrerqqqlaa ++ aaa++a a + r+ +++ +
  Zjn_sc00050.1.g01190.1.am.mkhc  93 GGGVSCQDCGNQAKKDCAHQRCRTCCKSRGFSCPTHVKSTWVPASKRRERQQQLAAFAAPAAATTAGAGPSRDVSKRPR 171
                                     5789*****************************************************9999999999999999888999 PP

                          DUF702  82 kqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                     ++ ++++ ++ss+++++ + ++++P+evsseavfrcvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G++
  Zjn_sc00050.1.g01190.1.am.mkhc 172 ARLTVATPTTSSGDPQMVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTTVSIGGHVFKGILHDVGPH 243
                                     9999******************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.6E-6495243IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-2697139IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.9E-23194242IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAGFPLGGGG HHSRDDPAPS VPPVHPSDAA SFLYAARAGS SGLQLWQQHE QQHPFYASNI  60
IRFSSDDPPG ASPSLAGAAA SSSSSRGTRG TGGGGVSCQD CGNQAKKDCA HQRCRTCCKS  120
RGFSCPTHVK STWVPASKRR ERQQQLAAFA APAAATTAGA GPSRDVSKRP RARLTVATPT  180
TSSGDPQMVT VAERFPREVS SEAVFRCVRL GPVDQAEAEV AYQTTVSIGG HVFKGILHDV  240
GPHCLASAGG SGAAIEYHHF RHAGDGSPPS TAPAGEAGGG GGGAGNIIPS SAVVMDPYPT  300
PGPYGAFPGG PPFFHGHPRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308557.11e-140protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A2T7EV231e-139A0A2T7EV23_9POAL; Uncharacterized protein
STRINGGRMZM2G080295_P011e-137(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.19e-50Lateral root primordium (LRP) protein-related