PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00049.1.g04400.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 385aa MW: 39567.6 Da PI: 8.7083 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 129.9 | 2.5e-40 | 61 | 215 | 2 | 116 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss Zjn_sc00049.1.g04400.1.sm.mk 61 PPKRSSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSS 141 789******************************************************************999888899999 PP TCP 82 asnsssg.......................................kaaksaakskksqksaasalnlakesra 116 +s+ s++ + a+++ + s +s + l+++ +s++ Zjn_sc00049.1.g04400.1.sm.mk 142 GSSFSIPahlraaglpgshfggargdawdrvvglgfggggaegpasATASASSPLLLSFHSGSVGLDVSPSSSS 215 88777777777777777777777777777777777777777777653333333555555555555666664443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-41 | 66 | 238 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.675 | 67 | 121 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDISGGRRPN FPLQLLEKKE EQPCSTSSQA AGGRGGSAGG AGANGSAAAA QGELQVRKVA 60 PPKRSSTKDR HTKVDGRGRR IRMPAICAAR VFQLTRELGH KTDGETIEWL LQQAEPAVIA 120 ATGTGTIPAN FTSLNISLRS SGSSFSIPAH LRAAGLPGSH FGGARGDAWD RVVGLGFGGG 180 GAEGPASATA SASSPLLLSF HSGSVGLDVS PSSSSAAANT DLSRKRWWEQ EIQYQQQHQY 240 QQQMAGYTQS QMPGTVWMMP SSNAHAGAGA AAGGSGGTES IWTLPQSGSG AATVYRGVPS 300 GLHFMNLPAP MALLPGGQQL GLAAPVGDNE NGDGSEGHIG VLASLKAYRA QAAQNGAEGS 360 SQQQQQQHQQ HGGREREESL GGSDS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965036.1 | 1e-146 | transcription factor TCP15 | ||||
Swissprot | Q93Z00 | 5e-57 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A0A9RPQ8 | 1e-157 | A0A0A9RPQ8_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G142751_P01 | 1e-146 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 9e-44 | TCP family protein |
Publications ? help Back to Top | |||
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