PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00049.1.g01700.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 21374.8 Da PI: 9.8525 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.3 | 2e-09 | 48 | 89 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W+t E+ +++++ + +G +Wk Ia ++ k+Rt+ + s+ qky Zjn_sc00049.1.g01700.1.sm.mk 48 WSTGEHRQFLRGLRVYGRSDWKNIAMHFVKTRTA--VSSHAQKY 89 *****************************99998..99999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.504 | 40 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-10 | 41 | 94 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 44 | 83 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.0E-11 | 44 | 93 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.7E-7 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-6 | 48 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-6 | 48 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MQREVLDDDP AMGNMDVLLG PVNVVDTTRA RRQPPRYPRA LRNKGRFWST GEHRQFLRGL 60 RVYGRSDWKN IAMHFVKTRT AVSSHAQKYY RRQESGVARQ QYSINDVSLY DAEPWAAPTN 120 NSSGSWETLS LAGGDYNNSN GYIAFGQQAP AQPALTMNNP APAMNNSAPT MNNTTPAMNY 180 TALAMNYTDP P |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6S5I4 | 5e-38 | A0A3L6S5I4_PANMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-16 | MYB family protein |