PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00049.1.g01360.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 413aa    MW: 45773.6 Da    PI: 5.7177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00049.1.g01360.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06153176123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   y+C+ Cg+ F+++ +L+rH r  H
  Zjn_sc00049.1.g01360.1.sm.mk 153 YSCTVCGRKFPTRPDLTRHFRQiH 176
                                   99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-5151179No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5152180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.3E-5153176IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.568153181IPR007087Zinc finger, C2H2
PROSITE patternPS000280155176IPR007087Zinc finger, C2H2
CDDcd061671.33E-10181303No hitNo description
Gene3DG3DSA:3.40.50.10101.7E-5200292IPR029060PIN domain-like
PfamPF019368.2E-5227293IPR021139NYN domain, limkain-b1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MPLAPSFLHL PPTPAPLYPL PINRTQHLSL RAAPLPRRAA VAAAAAEADN PSVAPASADV  60
EMVRGRDGVW TARSPTVVVL WDLDNKPPRG PPFPAASSLI AAASLLGRVV SVSAFANRHA  120
FTHLPAWVSA ERRDRRALDR AERAGVVAPP VPYSCTVCGR KFPTRPDLTR HFRQIHERER  180
NKKLNRMRSL KGKKRQKFRE RYISGNTKYN DAVRELLTPK VGYGLASELR RAGVDVRTVP  240
DKPQAADQAL KRQVKHSVAC GVDWLVLVSD DSDFTDTVHK ARDADLRTVV VGDGCRALGN  300
VADIWLPWDR VETGNVDEEM LRFGTRPDFE VEEEYQQDEQ FVVEWDTSDL DGLVDDIIGT  360
RTSLLGAATM SAFADSDITD GIFEVGLNGD SMFWSSDDEE EDDYLGKSQL EEL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810356.10.0uncharacterized protein LOC112888367
TrEMBLA0A1E5VTE60.0A0A1E5VTE6_9POAL; Uncharacterized protein
STRINGSb10g004570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-104C2H2-like zinc finger protein