PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00049.1.g00500.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Whirly | ||||||||
Protein Properties | Length: 143aa MW: 15421.7 Da PI: 10.2429 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 63.7 | 3.6e-20 | 89 | 141 | 1 | 53 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkq 53 s+yk+kaal+ +++ p+f+ ldsg+ k+ ++G +ll++a+a+a r+ydW +kq Zjn_sc00049.1.g00500.1.sm.mk 89 SIYKGKAALSFDPRPPQFVPLDSGAYKVAKEGCVLLQFAPAVASRQYDWTRKQ 141 7***************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 8.8E-27 | 77 | 141 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 4.87E-22 | 82 | 142 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.5E-19 | 90 | 141 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MPPSPPLFLS LPSPALMPVH LPKSAQTVSV ASPFPSPRKP ALPACSVSSP RHSDYFDPRA 60 PPPPPPRGNG YGRPPPNGSL DGRVFTSYSI YKGKAALSFD PRPPQFVPLD SGAYKVAKEG 120 CVLLQFAPAV ASRQYDWTRK QNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 7e-24 | 83 | 141 | 37 | 95 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 7e-24 | 83 | 141 | 37 | 95 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 7e-24 | 83 | 141 | 37 | 95 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 7e-24 | 83 | 141 | 37 | 95 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA and RNA binding protein that maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. Functions in RNA metabolism and is involved in the maturation of the atpF and 23S ribosomal RNAs. {ECO:0000269|PubMed:18676978, ECO:0000269|PubMed:19666500}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353795 | 1e-43 | AK353795.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002M22. | |||
GenBank | AK365452 | 1e-43 | AK365452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034E15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810386.1 | 9e-60 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | B2LXS7 | 1e-59 | WHY1_MAIZE; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A3L6EAT7 | 5e-60 | A0A3L6EAT7_MAIZE; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
STRING | GRMZM2G155662_P01 | 7e-58 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.2 | 1e-23 | ssDNA-binding transcriptional regulator |
Publications ? help Back to Top | |||
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