PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00049.1.g00150.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 543aa MW: 58929.3 Da PI: 8.1794

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00049.1.g00150.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	257	311	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le++F+ +++++ +++ LA++lgL rqV vWFqNrRa+ k Zjn_sc00049.1.g00150.1.am.mk 257 RKKLRLSKDQAAVLEDCFKTHSTLNPKQKLALANRLGLRPRQVEVWFQNRRARTK 311 678899***********************************************98 PP
2	HD-ZIP_I/II	123.5	1e-39	257	345	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rlsk+q+++LE++F+++++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLe Zjn_sc00049.1.g00150.1.am.mk 257 RKKLRLSKDQAAVLEDCFKTHSTLNPKQKLALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLE 337 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLre 89 ke ++L++ Zjn_sc00049.1.g00150.1.am.mk 338 KELADLKA 345 **9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-17	245	307	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.439	253	313	IPR001356	Homeobox domain
SMART	SM00389	1.7E-16	255	317	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.25E-17	255	322	IPR009057	Homeodomain-like
CDD	cd00086	6.20E-14	257	314	No hit	No description
Pfam	PF00046	5.1E-16	257	311	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	288	311	IPR017970	Homeobox, conserved site
Pfam	PF02183	4.2E-9	313	345	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	3.1E-16	313	356	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MLRRTTEEEQ VNNQPPMGLV VGGRRGPANN SSDLGESCRS VAFIGIIYQR ALDRSGAARP 60 RTMRHELVSR SKNERGSKRG EERVKNSKEA GDGGMGAWPC LMAGRAMTSE RGIRTTAHDS 120 RLCGATRLQL FIAPAFSTQS RTHRTTVFVF SSHLLRLGGL TSQSSLSSST TSGQLSPWAA 180 ALNSVVGDAR RDQARTADPA DQGTRRPSTS PDSAAALSSG DSGSNKRERD TELERTGSVN 240 GVRGGAGSDE EDGAGGRKKL RLSKDQAAVL EDCFKTHSTL NPKQKLALAN RLGLRPRQVE 300 VWFQNRRART KLKQTEVDCE YLKRWCERLA DENKRLEKEL ADLKAAPSPA AAAALTMCPS 360 CRRVASTAGA GTQHQQQQCH PKSNTAAVAG NVRPSHCQFF PAAVDRTPGQ STWNAAAAAP 420 LCSVRQEWRS FVHHRCLRSP SARQAPQPPP SSAHGSPLAM PDPRRSAMAT SRATIRARSE 480 KLVADVADSA SALTLQEPDV SSPENLLDNE SLKQLELEES DDDEEEEAEE EGQEEESEEE 540 EGF

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MLRRTTEEEQ VNNQPPMGLV VGGRRGPANN SSDLGESCRS VAFIGIIYQR ALDRSGAARP  60
RTMRHELVSR SKNERGSKRG EERVKNSKEA GDGGMGAWPC LMAGRAMTSE RGIRTTAHDS  120
RLCGATRLQL FIAPAFSTQS RTHRTTVFVF SSHLLRLGGL TSQSSLSSST TSGQLSPWAA  180
ALNSVVGDAR RDQARTADPA DQGTRRPSTS PDSAAALSSG DSGSNKRERD TELERTGSVN  240
GVRGGAGSDE EDGAGGRKKL RLSKDQAAVL EDCFKTHSTL NPKQKLALAN RLGLRPRQVE  300
VWFQNRRART KLKQTEVDCE YLKRWCERLA DENKRLEKEL ADLKAAPSPA AAAALTMCPS  360
CRRVASTAGA GTQHQQQQCH PKSNTAAVAG NVRPSHCQFF PAAVDRTPGQ STWNAAAAAP  420
LCSVRQEWRS FVHHRCLRSP SARQAPQPPP SSAHGSPLAM PDPRRSAMAT SRATIRARSE  480
KLVADVADSA SALTLQEPDV SSPENLLDNE SLKQLELEES DDDEEEEAEE EGQEEESEEE  540
EGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	305	313	RRARTKLKQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP093288	1e-117	FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3842	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-47	homeobox from Arabidopsis thaliana