PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00049.1.g00120.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 259aa    MW: 27121.6 Da    PI: 9.422
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00049.1.g00120.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-1972126256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ +++k+q ++Lee+F+ +++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Zjn_sc00049.1.g00120.1.sm.mk  72 RKKLRLSKDQANVLEECFKTHHTLTPKQKVALATSLDLRPRQVEVWFQNRRARTK 126
                                   788899***********************************************98 PP
2HD-ZIP_I/II123.21.3e-3972161191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL 
  Zjn_sc00049.1.g00120.1.sm.mk  72 RKKLRLSKDQANVLEECFKTHHTLTPKQKVALATSLDLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCEQLAEENRRLG 152
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   kev+eLr +l
  Zjn_sc00049.1.g00120.1.sm.mk 153 KEVAELR-AL 161
                                   ******9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-1943129IPR009057Homeodomain-like
SuperFamilySSF466894.18E-1863129IPR009057Homeodomain-like
PROSITE profilePS5007116.37468128IPR001356Homeobox domain
SMARTSM003891.3E-1570132IPR001356Homeobox domain
CDDcd000865.52E-1572129No hitNo description
PfamPF000462.1E-1672126IPR001356Homeobox domain
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PfamPF021832.2E-10128161IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-19128171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAPQSLDLGL SLGLNAVAVP DPWEVSPAAA EESRRRCSPA GSPPASSGSG KRAAERSGAG  60
SGDEDDDGGA ARKKLRLSKD QANVLEECFK THHTLTPKQK VALATSLDLR PRQVEVWFQN  120
RRARTKLKQT EVDCEHLKRW CEQLAEENRR LGKEVAELRA LNAASAPAPP LTTLSMCLSC  180
RRVAPSTTSS PSNATTNSAL AAHQHVHAAP NAAGVAPPPP AAAAAALPGR FFCGFMEAGS  240
APYGYGASSG LAKAVKAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681201e-120EU968120.1 Zea mays clone 314746 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812705.11e-94homeobox-leucine zipper protein HOX28-like
SwissprotA2Y9311e-61HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE51e-61HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A2S3HLY53e-93A0A2S3HLY5_9POAL; Uncharacterized protein
STRINGPavir.Da02255.1.p2e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-42homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]