PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00047.1.g03680.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 132aa MW: 13326.7 Da PI: 5.0908

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00047.1.g03680.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37	9.1e-12	97	132	1	36
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+ Zjn_sc00047.1.g03680.1.sm.mk 97 RWPRQETLALLKIRQDMDAAFRDATLKGPLWEQVSR 132 8*********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MQQQQQHGGG GRAGGGGGAA QQFGAQQVEM PPPPFSPAGQ RISVAEAPSP ISSRPPVLHQ 60 LDELGASGAG AGGFDAEGLA AAAAGEEGAS GGSAGSRWPR QETLALLKIR QDMDAAFRDA 120 TLKGPLWEQV SR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	17	GGRAGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269\|PubMed:19717615, ECO:0000269\|PubMed:21169508}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by water stress. {ECO:0000269\|PubMed:21169508}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794485.1	8e-42	trihelix transcription factor GTL1-like isoform X2
Swissprot	Q9C882	2e-16	GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBL	A0A2T7C4N9	2e-40	A0A2T7C4N9_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I1S4	2e-40	A0A2T8I1S4_9POAL; Uncharacterized protein
STRING	Pavir.Ia01419.1.p	4e-43	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15223	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-15	Trihelix family protein

Publications ? help Back to Top
Caro E,Desvoyes B,Gutierrez C GTL1 keeps cell growth and nuclear ploidy under control. EMBO J., 2012. 31(24): p. 4483-5 [PMID:23188085] Zheng X, et al. The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development. Sci Rep, 2016. 6: p. 27042 [PMID:27245096] Shibata M, et al. GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis. Development, 2018. [PMID:29439132]