PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00047.1.g03670.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 555aa    MW: 59559.7 Da    PI: 9.9026
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00047.1.g03670.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.61.8e-1419673787
                        trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                                    k++e+g++rs+k+Ckek+en+ k+yk++ke++ +r  ++ +t+++f+qlea
  Zjn_sc00047.1.g03670.1.sm.mkhc 19 KLAEQGYNRSAKKCKEKFENVVKYYKRTKESRAGR--NDGKTYRFFTQLEA 67
                                    789******************************97..56668*******85 PP
2trihelix110.21.3e-34351436187
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                     rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tc
  Zjn_sc00047.1.g03670.1.sm.mkhc 351 RWPKAEVHALIQLRSNLDTRYQDAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTC 428
                                     8*********************************************************************8.99***** PP

                        trihelix  80 pyfdqlea 87 
                                     pyf+ql+a
  Zjn_sc00047.1.g03670.1.sm.mkhc 429 PYFHQLDA 436
                                     ******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.2E-101868No hitNo description
PROSITE profilePS500907.166344408IPR017877Myb-like domain
SMARTSM007170.0051348410IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-4349407IPR009057Homeodomain-like
PfamPF138376.5E-24350437No hitNo description
CDDcd122033.77E-29351415No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MWESNCGAAG GARTPLIRKL AEQGYNRSAK KCKEKFENVV KYYKRTKESR AGRNDGKTYR  60
FFTQLEALHA TGSPASAAPS PATSFAPPST TVGVSGPLPV RAPAEPPPSV SAGAGAGMLP  120
TMGNVSFSTS NTEDYSDDDD SDDEGTQELG GGADERGKRK RLSEGAAAAG GSGGGKMMRF  180
FEGLMKQVLE RQEVMQQRFL EAIEKREQDR MIREEAWRRQ EMARLAREQE ILAQERAMAA  240
SRDAAVLSFI QKITGQTIPM PSIAAPAINV MPPPASHPPP QPHPMPAVSA PPSGSHTPPP  300
QPKPSPQRQK SPAPATPTQQ QPSDIVMMPA DAPHADTPGH DGSGGGASSS RWPKAEVHAL  360
IQLRSNLDTR YQDAGPKGPL WEEISAGMRR LGYNRNAKRC KEKWENINKY FKKVKESNKK  420
RPEDSKTCPY FHQLDALYRN KALSSSGAGA AVHGHASSAP QETVKVTAAA AISQTPPPPS  480
QPSQSSQHAA KTGKGKGGST ASEHGSSGST NGSVAGAKKT EDMMKETMEH RQPEPQQLKH  540
VGFTERFNVC GENGM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612051e-142BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794483.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794484.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A2S3IKR80.0A0A2S3IKR8_9POAL; Uncharacterized protein
STRINGGRMZM2G414159_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-51Trihelix family protein