PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00047.1.g02870.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 257aa MW: 27429.3 Da PI: 10.2834

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00047.1.g02870.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.3	8.8e-18	98	131	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Zjn_sc00047.1.g02870.1.sm.mk 98 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 131 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	3.18E-13	89	132	No hit	No description
SMART	SM00401	1.6E-18	92	144	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.268	96	128	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.4E-14	96	131	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.56E-14	97	129	No hit	No description
Pfam	PF00320	1.7E-15	98	131	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	98	123	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGGSDVIFPR PSPFRPTIQS IGSDMIQRSK YDPYDIENYR ADGSTGRWAV APPAKMKIMR 60 KATSEFPEGG AARKPRRKAQ AHQDESQQQQ ATGVVRVCSD CNTTKTPLWR SGPCGPKSLC 120 NACGIRQRKA RRAMAAAAAA AASNGGAAVT VKVPEQTKRA KERRAEADRS LPFKKRCKMA 180 AVDQAATAAK AVPAVAVPIP KEDQDQVLPA DSTETAPSLQ SNKGSTPPPA TFHAFPADEI 240 TDAAMLLMTL SCGLVHT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250\|UniProtKB:Q9SZI6, ECO:0000269\|PubMed:23548780}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269\|PubMed:23548780}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728050	4e-57	KJ728050.1 Zea mays clone pUT6196 C2C2-GATA transcription factor (GATA15) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795730.1	1e-116	putative GATA transcription factor 22
Swissprot	Q6YW48	5e-84	CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBL	A0A2S3GN70	1e-114	A0A2S3GN70_9POAL; Uncharacterized protein
STRING	Pavir.Aa02907.1.p	2e-97	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1893	38	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56860.1	1e-19	GATA family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Behringer C,Schwechheimer C B-GATA transcription factors - insights into their structure, regulation, and role in plant development. Front Plant Sci, 2015. 6: p. 90 [PMID:25755661]