PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00047.1.g02810.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 617aa    MW: 66769.8 Da    PI: 9.5887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00047.1.g02810.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11368411452
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                                     +h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ eY++
  Zjn_sc00047.1.g02810.1.sm.mkhc 368 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLEYMN 411
                                     78999********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.466364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-16365431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15367433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9368411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-12370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.07E-5379418No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MPAARAPGQR TDLITLVSCN AGRAGIRACS ARRLLRCVDA WLCDDGARGE GGRVRALFDA  60
YRGSLCAAVK GCVPGWAYID GRAYMELPAR DLTNSASMPD QQQFYQEAGI KMIIKFNLPP  120
ANGNNTQMAA FMGCESGEIE VGMSTAASGS PGSLETSLQQ VFSEDFFQQS LLEELLQLPP  180
TRPSSPSVSV DSPAAEGSTS LLRSTVAATP SSVERQVPPP PPMRHPRPPL PAALFGRHGY  240
VHFPSPESDD ALMAQAMLDV ISAPSTSSLP SPCSPPPQGY HRARRWPRRW GTASAFWPYN  300
PALAPRVPRR QPGVPGQRMI KMGFSILRRM HLVQRFSRER DPAAATAQQR CQDDEAAEPA  360
VPSSSQLNHM ISERRRRERL NESFEALRGL LPPGSKKDKA TVLAKTLEYM NILVSQIADL  420
EARNRSLESR AHQRANGGCK ELIMYSSEPQ AAPLHQGPSG TTSEGVQVHV HVNSSGGEAS  480
TSSSSLSRPQ EVSVRVVVRA EGDVAALVTR VLAVIRETGR FTVASVDARR PGDGGIAQAT  540
FGLRAQGLSL SRPVGYLGVQ MQFFEGSLLP KSGQSQTYQP PGCRFPQPRV CGPYPYRKLN  600
LNYSILENLS GPTPRPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372377ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792429.11e-171putative transcription factor bHLH041 isoform X3
TrEMBLA0A2T7F3R81e-170A0A2T7F3R8_9POAL; Uncharacterized protein
STRINGPavir.J40109.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-16bHLH family protein