PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00047.1.g02550.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HB-other | ||||||||
Protein Properties | Length: 103aa MW: 11286.8 Da PI: 10.1331 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.1 | 2.3e-06 | 45 | 68 | 31 | 54 |
HHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 31 eeLAkklgLterqVkvWFqNrRak 54 LA++ gLt++qV+ WF N R + Zjn_sc00047.1.g02550.1.sm.mk 45 DTLAARSGLTQTQVSCWFINARVR 68 579*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.28E-8 | 44 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.6E-7 | 45 | 68 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 1.32E-5 | 45 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-10 | 46 | 74 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MLASGAADAP HSISATDGRS SGRQEKIGSS EAEAHFIHSS ASLFDTLAAR SGLTQTQVSC 60 WFINARVRIW KPVLPAACRF ASAMQARRLC YARRERKVHL ELD |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP65310 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 2e-10 | homeobox gene 1 |